RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1112809 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9149091 9149091 PRJNA1112809_P_NODE_75088_length_400_cov_1.648318_g71813_i0 PRJNA1112809 75088 400 1.648318 6.593272 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 641 1.7899999999999994e-179   NTclustered gi|1850842921|gb|CP053447.1| 2026749 g71813 i0 96.632 377.785 386 13 97 0 1 386 429697 430082 Ignavibacteriae bacterium isolate IGN3 chromosome blastn 151114 641 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
12972866 12972866 PRJNA1112809_P_NODE_124631_length_291_cov_0.853211_g121356_i0 PRJNA1112809 124631 291 0.853211 2.48284401 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 195 4.23e-45   NTclustered gi|2621786307|emb|OY782765.1| 2614255 g121356 i0 79.538 109.113402061856 303 38 100 17 1 291 2844064 2844354 MAG: Melioribacteraceae bacterium isolate b49f5fa7-6043-4eb4-88a3-53a29b1f0925 genome assembly, chromosome: 1 blastn 31752 195 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium
18071493 18071493 PRJNA1112809_P_NODE_171295_length_248_cov_3.165714_g168020_i0 PRJNA1112809 171295 248 3.165714 7.85097072 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 398 2.5e-106   NTclustered gi|1850842921|gb|CP053447.1| 2026749 g168020 i0 95.565 2.01612903225806 248 11 100 0 1 248 430530 430283 Ignavibacteriae bacterium isolate IGN3 chromosome blastn 500 398 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
21425341 21425341 PRJNA1112809_P_NODE_166897_length_250_cov_0.870056_g163622_i0 PRJNA1112809 166897 250 0.870056 2.17514 Melioribacter 1134403 Bacteria Bacteria 331 2.6e-86   NTclustered gi|470490269|ref|NR_076978.1| 1134405 g163622 i0 91.701 170.884 241 16 96 4 8 246 1301 1539 Melioribacter roseus strain P3M-2 23S ribosomal RNA gene, complete sequence blastn 42721 331 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae Melioribacter Melioribacter roseus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;