RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1112809 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2770054 2770054 PRJNA1112809_P_NODE_147943_length_265_cov_2.494792_g144668_i0 PRJNA1112809 147943 265 2.494792 6.6111988 Acytostelium leptosomum 133408 Evosea other_Eukaryota 390 4.519999999999999e-104   NTclustered gi|1057487862|gb|KX539491.1| 133408 g144668 i0 92.989 1.42264150943396 271 13 100 1 1 265 691 961 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 377 390 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
7871834 7871834 PRJNA1112809_P_NODE_124407_length_291_cov_1.389908_g121132_i0 PRJNA1112809 124407 291 1.389908 4.04463228 Acytostelium leptosomum 133408 Evosea other_Eukaryota 527 3.67e-145   NTclustered gi|1057487862|gb|KX539491.1| 133408 g121132 i0 99.313 91.1821305841924 291 2 100 0 1 291 495 205 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 26534 527 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
16797460 16797460 PRJNA1112809_P_NODE_201154_length_206_cov_4.030075_g197879_i0 PRJNA1112809 201154 206 4.030075 8.3019545 Acytostelium leptosomum 133408 Evosea other_Eukaryota 326 9.61e-85   NTclustered gi|1057487862|gb|KX539491.1| 133408 g197879 i0 95.146 95.3349514563107 206 10 100 0 1 206 1120 915 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 19639 326 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;