RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1112809 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2769975 2769975 PRJNA1112809_P_NODE_143803_length_269_cov_3.137755_g140528_i0 PRJNA1112809 143803 269 3.137755 8.44056095 uncultured ciliate 187299 SAR_Eukaryotes SAR_Eukaryotes 497 2.63e-136   NTclustered gi|1628762178|gb|MK868185.1| 187299 g140528 i0 100 100.2156133829 269 0 100 0 1 269 110 378 Uncultured ciliate clone TFA3.22 small subunit ribosomal RNA gene, partial sequence blastn 26958 497 1 Eukaryota Sar   Ciliophora         uncultured ciliate
11226609 11226609 PRJNA1112809_P_NODE_142789_length_270_cov_5.827411_g139514_i0 PRJNA1112809 142789 270 5.827411 15.7340097 root 1 Root_unresolved Root_unresolved 477 3.4499999999999986e-130   NTclustered gi|345541658|gb|JN547815.1| 5911 g139514 i0 98.519 80.3296296296296 270 4 100 0 1 270 3528 3797 Tetrahymena thermophila strain ATCC 30382 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 21689 477 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
12973029 12973029 PRJNA1112809_P_NODE_133071_length_281_cov_1.370192_g129796_i0 PRJNA1112809 133071 281 1.370192 3.85023952 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 176 1.47e-39   NTclustered gi|829188477|ref|XM_001023087.3| 312017 g129796 i0 82.673 26.9679715302491 202 31 71 4 8 207 850 1049 Tetrahymena thermophila SB210 S-adenosyl-L-homocysteine hydrolase partial mRNA blastn 7578 176 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
14250681 14250681 PRJNA1112809_P_NODE_92572_length_347_cov_4.594891_g89297_i0 PRJNA1112809 92572 347 4.594891 15.94427177 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 597 3.369999999999999e-166   NTclustered gi|10782|emb|X54004.1| 5908 g89297 i0 97.983 57.7060518731988 347 2 100 1 1 347 3290 2949 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 20024 597 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;