RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Candidatus Latescibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1112809 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1493216 1493216 PRJNA1112809_P_NODE_101522_length_328_cov_1.584314_g98247_i0 PRJNA1112809 101522 328 1.584314 5.19654992 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 63.9 1.43e-5   NTclustered gi|2575820357|emb|OY730476.1| 2053570 g98247 i0 97.297 0.603658536585366 37 1 13 0 213 249 4785898 4785862 MAG: Candidatus Latescibacteria bacterium isolate 667a1def-a863-4bf2-9b98-94036fb31650 genome assembly, chromosome: 1 blastn 198 63.9 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
6599829 6599829 PRJNA1112809_P_NODE_92106_length_349_cov_1.115942_g88831_i0 PRJNA1112809 92106 349 1.115942 3.89463758 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 235 3.05e-57   NTclustered gi|2108033339|gb|CP070763.1| 2053570 g88831 i0 79.42 75.6934097421203 345 61 97 9 10 349 924088 923749 MAG: Candidatus Latescibacterota bacterium isolate bin260 chromosome blastn 26417 235 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
14247692 14247692 PRJNA1112809_P_NODE_111812_length_309_cov_3.508475_g108537_i0 PRJNA1112809 111812 309 3.508475 10.84118775 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 58.4 6.2e-4   NTclustered gi|2575820357|emb|OY730476.1| 2053570 g108537 i0 100 0.200647249190939 31 0 10 0 182 212 1333842 1333872 MAG: Candidatus Latescibacteria bacterium isolate 667a1def-a863-4bf2-9b98-94036fb31650 genome assembly, chromosome: 1 blastn 62 58.4 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
14249269 14249269 PRJNA1112809_P_NODE_198232_length_230_cov_3.445860_g194957_i0 PRJNA1112809 198232 230 3.44586 7.925478 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 58.4 4.41e-4   NTclustered gi|2531976020|emb|OY282352.1| 199737 g194957 i0 100 0.404347826086957 31 0 13 0 46 76 4540214 4540184 MAG: uncultured Latescibacteria bacterium genome assembly, chromosome: 1 blastn 93 58.4 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;