RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1112809 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11226668 11226668 PRJNA1112809_P_NODE_164649_length_251_cov_0.865169_g161374_i0 PRJNA1112809 164649 251 0.865169 2.17157419 Bdellovibrio 958 Bacteria Bacteria 182 2.78e-41   NTclustered gi|2801803968|gb|CP169237.1| 959 g161374 i0 79.921 2.02390438247012 254 45 100 5 1 251 3316080 3315830 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 508 182 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
19347726 19347726 PRJNA1112809_P_NODE_96976_length_337_cov_2.424242_g93701_i0 PRJNA1112809 96976 337 2.424242 8.16969554 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 76.8 1.89e-9   NTclustered gi|2621706492|emb|OY764265.1| 3034175 g93701 i0 94 1.08308605341246 50 3 15 0 136 185 1805896 1805847 MAG: Bdellovibrionota bacterium isolate efddfb02-ff0c-4ac5-ae96-c61d995422a3 genome assembly, chromosome: 1 blastn 365 76.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;