RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1112809 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
221501 221501 PRJNA1112809_P_NODE_83081_length_373_cov_1.720000_g79806_i0 PRJNA1112809 83081 373 1.72 6.4156 Gammaretrovirus murleu 3428959 Viruses Viruses 488 2.2799999999999993e-133   NTclustered gi|1443026875|gb|MH450110.1| 11837 g79806 i0 90.349 118.522788203753 373 35 100 1 1 373 8188 7817 Xenotropic murine leukemia virus isolate AKR6, complete genome blastn 44209 488 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
5323074 5323074 PRJNA1112809_P_NODE_19205_length_1248_cov_29.915745_g533_i9 PRJNA1112809 19205 1248 29.915745 373.3484976 Gammaretrovirus murleu 3428959 Viruses Viruses 1917 0   NTclustered gi|33329369|gb|AF532608.1| 11786 g533 i9 97.84 95.0016025641026 1111 22 89 1 3 1113 1109 1 Murine leukemia virus isolate 11 envelope protein mRNA, complete cds blastn 118562 1917 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
20620666 20620666 PRJNA1112809_P_NODE_15397_length_1511_cov_11.769124_g533_i7 PRJNA1112809 15397 1511 11.769124 177.83146364 Gammaretrovirus murleu 3428959 Viruses Viruses 2460 0   NTclustered gi|38155073|gb|AY349142.1| 11786 g533 i7 99.629 96.3328921244209 1347 5 89 0 136 1482 1 1347 Murine leukemia virus isolate SP(B)2 unknown mRNA blastn 145559 2460 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;