RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA1112809 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2770054 2770054 PRJNA1112809_P_NODE_147943_length_265_cov_2.494792_g144668_i0 PRJNA1112809 147943 265 2.494792 6.6111988 Acytostelium leptosomum 133408 Evosea other_Eukaryota 390 4.519999999999999e-104   NTclustered gi|1057487862|gb|KX539491.1| 133408 g144668 i0 92.989 1.42264150943396 271 13 100 1 1 265 691 961 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 377 390 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
4048632 4048632 PRJNA1112809_P_NODE_92204_length_348_cov_2.745455_g88929_i0 PRJNA1112809 92204 348 2.745455 9.5541834 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 254 8.42e-63   NTclustered gi|909719647|gb|KT185627.1| 5778 g88929 i0 80.851 2.20977011494253 329 57 94 5 21 347 25288 25612 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 769 254 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6599643 6599643 PRJNA1112809_P_NODE_82146_length_376_cov_1.669967_g78871_i0 PRJNA1112809 82146 376 1.669967 6.27907592 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 422 2.37e-113   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g78871 i0 87.903 55.1595744680851 372 27 99 12 6 376 1243 889 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 20740 422 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
7871834 7871834 PRJNA1112809_P_NODE_124407_length_291_cov_1.389908_g121132_i0 PRJNA1112809 124407 291 1.389908 4.04463228 Acytostelium leptosomum 133408 Evosea other_Eukaryota 527 3.67e-145   NTclustered gi|1057487862|gb|KX539491.1| 133408 g121132 i0 99.313 91.1821305841924 291 2 100 0 1 291 495 205 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 26534 527 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
11698144 11698144 PRJNA1112809_P_NODE_145370_length_268_cov_1.528205_g142095_i0 PRJNA1112809 145370 268 1.528205 4.0955894 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 226 1.37e-54   NTclustered gi|909719647|gb|KT185627.1| 5778 g142095 i0 81.955 0.992537313432836 266 48 99 0 3 268 7433 7698 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 266 226 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13776384 13776384 PRJNA1112809_P_NODE_111411_length_310_cov_1.869198_g108136_i0 PRJNA1112809 111411 310 1.869198 5.7945138 Vermamoeba 1260114 Tubulinea other_Eukaryota 568 2.3299999999999995e-157   NTclustered gi|909719645|gb|KT185625.1| 5778 g108136 i0 99.677 98.1612903225806 310 1 100 0 1 310 5615 5306 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 30430 568 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16797460 16797460 PRJNA1112809_P_NODE_201154_length_206_cov_4.030075_g197879_i0 PRJNA1112809 201154 206 4.030075 8.3019545 Acytostelium leptosomum 133408 Evosea other_Eukaryota 326 9.61e-85   NTclustered gi|1057487862|gb|KX539491.1| 133408 g197879 i0 95.146 95.3349514563107 206 10 100 0 1 206 1120 915 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 19639 326 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
21425703 21425703 PRJNA1112809_P_NODE_93977_length_344_cov_2.191882_g90702_i0 PRJNA1112809 93977 344 2.191882 7.54007408 Vermamoeba 1260114 Tubulinea other_Eukaryota 614 3.309999999999999e-171   NTclustered gi|909719645|gb|KT185625.1| 5778 g90702 i0 98.837 40.9302325581395 344 4 100 0 1 344 5343 5000 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14080 614 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21897687 21897687 PRJNA1112809_P_NODE_45618_length_581_cov_90.838583_g42377_i0 PRJNA1112809 45618 581 90.838583 527.77216723 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 584 4.579999999999998e-162   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g42377 i0 85.025 64.3373493975904 601 61 100 23 1 581 15 606 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 37380 584 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;