RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1111448" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111448 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6596032 6596032 PRJNA1111448_S_NODE_38526_length_378_cov_6.521311_g37703_i0 PRJNA1111448 38526 378 6.521311 24.65055558 Mantoniella tinhauana 3097027 Plants Plants 52.8 0.036   NTclustered gi|2735153277|gb|CP140062.1| 3097027 g37703 i0 100 0.0740740740740741 28 0 7 0 93 120 4777490 4777463 Mantoniella tinhauana isolate LFS chromosome 1 blastn 28 52.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
23169792 23169792 PRJNA1111448_S_NODE_125459_length_248_cov_1.320000_g124636_i0 PRJNA1111448 125459 248 1.32 3.2736 Boodleopsis sp. H.0758 2320802 Plants Plants 110 1.31e-19   NTclustered gi|1509834938|ref|NC_039521.1| 2320802 g124636 i0 78.916 33.7096774193548 166 31 66 3 32 195 14236 14399 Boodleopsis sp. H.0758 chloroplast, complete genome blastn 8360 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Halimedaceae Boodleopsis Boodleopsis sp. H.0758

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;