RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1111448" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111448 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6125913 6125913 PRJNA1111448_S_NODE_82685_length_292_cov_1.913242_g81862_i0 PRJNA1111448 82685 292 1.913242 5.58666664 Tremellales 5234 Fungi Fungi 137 7.26e-28   NTclustered gi|155089195|gb|EU046042.1| 227714 g81862 i0 91.919 34.5787671232877 99 7 34 1 189 287 538 441 Uncultured Tremellales isolate RSEM07_11E internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 10097 137 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales     uncultured Tremellales
6596285 6596285 PRJNA1111448_S_NODE_63266_length_322_cov_0.907631_g62443_i0 PRJNA1111448 63266 322 0.907631 2.92257182 Suillus discolor 1912936 Fungi Fungi 52.8 0.03   NTclustered gi|2033180561|ref|XM_041432306.1| 1912936 g62443 i0 100 0.0869565217391304 28 0 9 0 267 294 49 76 Suillus discolor MFS general substrate transporter (F5147DRAFT_604590), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus discolor
7870195 7870195 PRJNA1111448_S_NODE_116287_length_255_cov_1.208791_g115464_i0 PRJNA1111448 116287 255 1.208791 3.08241705 Suillus luteus 5384 Fungi Fungi 52.8 0.023   NTclustered gi|998623171|emb|LN999935.1| 5384 g115464 i0 100 0.109803921568627 28 0 11 0 1 28 3 30 Suillus luteus mRNA for Isocitrate lyase (ICL gene), isolate sp9 blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus luteus
12971141 12971141 PRJNA1111448_S_NODE_103411_length_268_cov_1.184615_g102588_i0 PRJNA1111448 103411 268 1.184615 3.1747682 Malassezia globosa 76773 Fungi Fungi 457 4.45e-124   NTclustered gi|164656866|ref|XM_001729508.1| 425265 g102588 i0 98.456 3.4589552238806 259 4 97 0 1 259 609 867 Malassezia globosa CBS 7966 uncharacterized protein (MGL_3104), partial mRNA blastn 927 457 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa
16795494 16795494 PRJNA1111448_S_NODE_85314_length_289_cov_1.319444_g84491_i0 PRJNA1111448 85314 289 1.319444 3.81319316 Suillus bovinus 48563 Fungi Fungi 154 7.13e-33   NTclustered gi|2033090892|ref|XM_041454872.1| 48563 g84491 i0 83.951 5.83044982698962 162 24 56 2 128 288 5602 5442 Suillus bovinus uncharacterized protein (EDB93DRAFT_1319216), mRNA blastn 1685 154 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus bovinus
20619157 20619157 PRJNA1111448_S_NODE_50017_length_348_cov_1.367273_g49194_i0 PRJNA1111448 50017 348 1.367273 4.75811004 Leucosporidium sp. AY30 662878 Fungi Fungi 95.3 5.4e-15   NTclustered gi|254927417|gb|GQ336996.1| 662878 g49194 i0 81.739 23.0775862068966 115 19 33 2 153 266 5553 5440 Leucosporidium sp. AY30 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 8031 95.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium sp. AY30
25248954 25248954 PRJNA1111448_S_NODE_138440_length_241_cov_1.375000_g137617_i0 PRJNA1111448 138440 241 1.375 3.31375 Helicogloeaceae 2249318 Fungi Fungi 128 3.4999999999999997e-25   NTclustered gi|514995909|gb|KF061296.1| 139067 g137617 i0 97.333 33.0331950207469 75 2 31 0 1 75 1860 1934 Infundibura adhaerens strain TUB 020326 28S large subunit ribosomal RNA gene, partial sequence blastn 7961 128 1 Eukaryota Opisthokonta Fungi Basidiomycota Atractiellomycetes Atractiellales Helicogloeaceae Infundibura Infundibura adhaerens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;