RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1111448" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1111448 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15520405 15520405 PRJNA1111448_S_NODE_16693_length_494_cov_6.453682_g15878_i0 PRJNA1111448 16693 494 6.453682 31.88118908 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 876 0   NTclustered gi|821341785|gb|CP011389.1| 1309411 g15878 i0 100 218.034412955466 474 0 96 0 21 494 1885993 1886466 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 107709 876 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
16794842 16794842 PRJNA1111448_S_NODE_17494_length_487_cov_1.601449_g16677_i0 PRJNA1111448 17494 487 1.601449 7.79905663 Trueperaceae bacterium 2026798 Bacteria Bacteria 634 3.709999999999999e-177   NTclustered gi|2108366028|gb|CP070651.1| 2026798 g16677 i0 91.258 450.383983572895 469 36 96 5 1 466 6972 6506 MAG: Trueperaceae bacterium isolate bin86 chromosome blastn 219337 634 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
20148964 20148964 PRJNA1111448_S_NODE_142456_length_230_cov_2.171975_g141633_i0 PRJNA1111448 142456 230 2.171975 4.9955425 Deinococcus 1298 Bacteria Bacteria 403 4.92e-108   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g141633 i0 98.261 8.04347826086956 230 4 100 0 1 230 1411733 1411504 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 1850 403 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
22699787 22699787 PRJNA1111448_S_NODE_6378_length_681_cov_4.465461_g5670_i0 PRJNA1111448 6378 681 4.465461 30.40978941 Deinococcus 1298 Bacteria Bacteria 1258 0   NTclustered gi|2113031129|gb|OK500351.1| 47478 g5670 i0 100 106.019089574156 681 0 100 0 1 681 152 832 Deinococcus sp. strain R11 16S ribosomal RNA gene, partial sequence blastn 72199 1258 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;