RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1111448" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJNA1111448 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
217940 217940 PRJNA1111448_S_NODE_46201_length_357_cov_1.626761_g45378_i0 PRJNA1111448 46201 357 1.626761 5.80753677 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 359 1.78e-94   NTclustered gi|300078503|gb|GU001165.1| 238746 g45378 i0 85.311 67.7563025210084 354 45 99 7 1 352 2972 2624 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24189 359 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
19343900 19343900 PRJNA1111448_S_NODE_44156_length_362_cov_2.695502_g43333_i0 PRJNA1111448 44156 362 2.695502 9.75771724 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 141 7.120000000000001e-29   NTclustered gi|300078503|gb|GU001165.1| 238746 g43333 i0 86.154 32.5524861878453 130 18 36 0 148 277 3062 2933 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11784 141 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
21894156 21894156 PRJNA1111448_S_NODE_114998_length_256_cov_1.284153_g114175_i0 PRJNA1111448 114998 256 1.284153 3.28743168 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g114175 i0 100 0.58203125 30 0 12 0 1 30 74 103 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 149 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;