RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1111146" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111146 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
216703 216703 PRJNA1111146_P_NODE_398361_length_179_cov_0.904762_g397223_i0 PRJNA1111146 398361 179 0.904762 1.61952398 Termitidicoccus mucosus 1184151 Bacteria Bacteria 134 5.2600000000000005e-27   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g397223 i0 84.962 29.2960893854749 133 18 74 2 16 147 7241766 7241897 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 5244 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
1490631 1490631 PRJNA1111146_P_NODE_224842_length_201_cov_1.540541_g223704_i0 PRJNA1111146 224842 201 1.540541 3.09648741 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 137 4.69e-28   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g223704 i0 84.783 1.43781094527363 138 20 68 1 39 175 4746069 4745932 Luteolibacter sp. LG18 DNA, complete genome blastn 289 137 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
4042542 4042542 PRJNA1111146_P_NODE_160544_length_217_cov_1.329268_g159406_i0 PRJNA1111146 160544 217 1.329268 2.88451156 Methylacidimicrobium sp. AP8 2730359 Bacteria Bacteria 152 1.84e-32   NTclustered gi|1934804479|emb|LR797830.1| 2730359 g159406 i0 80 280.456221198157 210 38 96 4 5 213 561270 561476 Methylacidimicrobium sp. AP8 isolate MTHMO1 genome assembly, chromosome: I blastn 60859 152 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota       Methylacidimicrobium Methylacidimicrobium sp. AP8
10420415 10420415 PRJNA1111146_P_NODE_431729_length_177_cov_0.919355_g430591_i0 PRJNA1111146 431729 177 0.919355 1.62725835 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 148 1.85e-31   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g430591 i0 82.659 10.9491525423729 173 24 96 4 8 177 458896 458727 Luteolibacter sp. LG18 DNA, complete genome blastn 1938 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
12500726 12500726 PRJNA1111146_P_NODE_303890_length_186_cov_1.684211_g302752_i0 PRJNA1111146 303890 186 1.684211 3.13263246 Akkermansia 239934 Bacteria Bacteria 193 8.98e-45   NTclustered gi|2051350654|gb|CP072036.1| 2927224 g302752 i0 86.034 47.2795698924731 179 25 96 0 1 179 1092879 1093057 Akkermansia massiliensis strain Akk1573 chromosome, complete genome blastn 8794 193 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis
20617151 20617151 PRJNA1111146_P_NODE_234717_length_199_cov_1.561644_g233579_i0 PRJNA1111146 234717 199 1.561644 3.10767156 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 246 7.379999999999999e-61   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g233579 i0 89.055 1.01005025125628 201 19 99 1 1 198 3952344 3952144 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 201 246 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;