RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1111146" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111146 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
216256 216256 PRJNA1111146_P_NODE_305521_length_186_cov_1.278195_g304383_i0 PRJNA1111146 305521 186 1.278195 2.3774427 Mermithidae sp. XT-2021 2814110 Nematoda Nematoda 73.1 1.22e-8   NTclustered gi|1993669213|gb|MW653323.1| 2814110 g304383 i0 93.75 25.4408602150538 48 3 26 0 139 186 462 509 Mermithidae sp. XT-2021 voucher Mermithid-eriosoma auratum-2017 large subunit ribosomal RNA gene, partial sequence blastn 4732 73.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Mermithida Mermithidae   Mermithidae sp. XT-2021
6594694 6594694 PRJNA1111146_P_NODE_356286_length_182_cov_0.875969_g355148_i0 PRJNA1111146 356286 182 0.875969 1.59426358 Caenorhabditis remanei 31234 Nematoda Nematoda 222 1.11e-53   NTclustered gi|2445347854|ref|XM_003109090.2| 31234 g355148 i0 91.358 13.4395604395604 162 14 89 0 20 181 1137 1298 Caenorhabditis remanei uncharacterized protein (GCK72_000540), partial mRNA blastn 2446 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;