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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1111146" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1111146 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
216146 216146 PRJNA1111146_P_NODE_277701_length_191_cov_1.289855_g276563_i0 PRJNA1111146 277701 191 1.289855 2.46362305 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 326 8.77e-85   NTclustered gi|110645063|gb|DQ665311.1| 151077 g276563 i0 98.378 35.2565445026178 185 3 97 0 1 185 722 906 Chilodonella uncinata clone 1 elongation factor 1-alpha (EF-1alpha) gene, partial cds; macronuclear blastn 6734 326 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
2297437 2297437 PRJNA1111146_P_NODE_381622_length_180_cov_1.212598_g380484_i0 PRJNA1111146 381622 180 1.212598 2.1826764 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 333 4.87e-87   NTclustered gi|27530358|dbj|AB035329.1| 5911 g380484 i0 100 2 180 0 100 0 1 180 318 139 Tetrahymena thermophila MYO6 mRNA for myosin, partial cds blastn 360 333 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
6124539 6124539 PRJNA1111146_P_NODE_17905_length_386_cov_1.804805_g16769_i0 PRJNA1111146 17905 386 1.804805 6.9665473 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 601 2.9199999999999998e-167   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g16769 i0 94.805 97.520725388601 385 20 99 0 2 386 10 394 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 37643 601 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
6125330 6125330 PRJNA1111146_P_NODE_86605_length_251_cov_4.237374_g85467_i0 PRJNA1111146 86605 251 4.237374 10.63580874 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 283 7.409999999999999e-72   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g85467 i0 97.576 74.5099601593625 165 4 66 0 87 251 3082 2918 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 18702 283 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
9143873 9143873 PRJNA1111146_P_NODE_284848_length_190_cov_1.021898_g283710_i0 PRJNA1111146 284848 190 1.021898 1.9416062 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 302 1.47e-77   NTclustered gi|300676719|gb|GQ377693.1| 151077 g283710 i0 95.263 2.7 190 9 100 0 1 190 291 102 Chilodonella uncinata gcr5-like mRNA, partial sequence blastn 513 302 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
9144655 9144655 PRJNA1111146_P_NODE_444088_length_173_cov_2.266667_g442950_i0 PRJNA1111146 444088 173 2.266667 3.92133391 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 309 7.81e-80   NTclustered gi|1389430803|gb|MH341631.1| 1938391 g442950 i0 99.412 57.7803468208092 170 1 98 0 2 171 814 645 Chilodonella hexasticha strain C. hexasticha SC large subunit ribosomal RNA gene, partial sequence blastn 9996 309 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
11694401 11694401 PRJNA1111146_P_NODE_161650_length_217_cov_0.835366_g160512_i0 PRJNA1111146 161650 217 0.835366 1.81274422 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 344 2.8199999999999993e-90   NTclustered gi|2651357788|gb|PP174303.1| 41631 g160512 i0 95.392 71.2258064516129 217 8 100 2 1 217 3575 3361 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15456 344 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
21423424 21423424 PRJNA1111146_P_NODE_123837_length_232_cov_0.921788_g122699_i0 PRJNA1111146 123837 232 0.921788 2.13854816 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 429 8.2e-116   NTclustered gi|1202134875|gb|KY454454.1| 63136 g122699 i0 100 98.9439655172414 232 0 100 0 1 232 232 1 Colpoda steinii 18S ribosomal RNA gene, partial sequence blastn 22955 429 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;