RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1111146" and tax_phylum = "Candidatus Absconditibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1111146 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14244560 14244560 PRJNA1111146_P_NODE_150972_length_220_cov_1.718563_g149834_i0 PRJNA1111146 150972 220 1.718563 3.7808386 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 324 3.7399999999999997e-84   NTclustered gi|563351663|gb|CP006913.1| 1394709 g149834 i0 93.182 72.5454545454545 220 15 100 0 1 220 127356 127137 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 15960 324 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
18873904 18873904 PRJNA1111146_P_NODE_76175_length_259_cov_2.815534_g75037_i0 PRJNA1111146 76175 259 2.815534 7.29223306 Bacteria 2 Bacteria Bacteria 479 9.13e-131   NTclustered gi|402243569|gb|JX294355.1| 1226341 g75037 i0 100 92.3938223938224 259 0 100 0 1 259 1383 1125 SR1 bacterium oral taxon 874 clone 4Y03 16S ribosomal RNA gene, partial sequence blastn 23930 479 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         SR1 bacterium oral taxon 874

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;