RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1111146" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1111146 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1022121 1022121 PRJNA1111146_P_NODE_5541_length_700_cov_3.307573_g4476_i0 PRJNA1111146 5541 700 3.307573 23.153011 Fimbriimonas 1005038 Bacteria Bacteria 891 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g4476 i0 89.744 165.968571428571 702 64 99 8 2 700 29183 28487 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 116178 891 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
1491860 1491860 PRJNA1111146_P_NODE_94882_length_246_cov_1.518135_g93744_i0 PRJNA1111146 94882 246 1.518135 3.7346121 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 248 2.6399999999999997e-61   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g93744 i0 85.417 197.707317073171 240 34 97 1 1 239 667410 667649 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 48636 248 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
24442508 24442508 PRJNA1111146_P_NODE_354780_length_182_cov_0.875969_g353642_i0 PRJNA1111146 354780 182 0.875969 1.59426358 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 115 1.95e-21   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g353642 i0 83.333 23.8956043956044 126 19 69 2 57 181 1159829 1159953 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 4349 115 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;