RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1111146" and tax_kingdom = "Bamfordvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 2 ✖

bioproject 1

  • PRJNA1111146 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9949893 9949893 PRJNA1111146_P_NODE_241768_length_198_cov_1.227586_g240630_i0 PRJNA1111146 241768 198 1.227586 2.43062028 Molluscipoxvirus 10278 Viruses Viruses 361 2.51e-95   NTclustered gi|2620269141|tpg|BK012005.1| 10279 g240630 i0 99.495 63.8383838383838 198 1 100 0 1 198 133348 133545 TPA_asm: Molluscum contagiosum virus isolate MCV1_MET1077, complete genome blastn 12640 361 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Molluscipoxvirus Molluscipoxvirus molluscum
20148375 20148375 PRJNA1111146_P_NODE_375996_length_180_cov_2.598425_g374858_i0 PRJNA1111146 375996 180 2.598425 4.677165 Molluscipoxvirus 10278 Viruses Viruses 333 4.87e-87   NTclustered gi|2620269141|tpg|BK012005.1| 10279 g374858 i0 100 64.8833333333333 180 0 100 0 1 180 83270 83091 TPA_asm: Molluscum contagiosum virus isolate MCV1_MET1077, complete genome blastn 11679 333 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Molluscipoxvirus Molluscipoxvirus molluscum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;