RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1111082" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111082 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5318346 5318346 PRJNA1111082_P_NODE_8125_length_284_cov_1.582938_g8080_i0 PRJNA1111082 8125 284 1.582938 4.49554392 Lacipirellula limnantheis 2528024 Bacteria Bacteria 217 8.79e-52   NTclustered gi|1712529062|gb|CP036339.1| 2528024 g8080 i0 81.004 1.87676056338028 279 48 98 4 2 278 4821548 4821273 Lacipirellula limnantheis strain I41 chromosome blastn 533 217 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Lacipirellula Lacipirellula limnantheis
20616662 20616662 PRJNA1111082_P_NODE_9957_length_257_cov_2.119565_g9912_i0 PRJNA1111082 9957 257 2.119565 5.44728205 Frigoriglobus tundricola 2774151 Bacteria Bacteria 243 1.2900000000000001e-59   NTclustered gi|1870286614|gb|CP053452.2| 2774151 g9912 i0 84.553 4.83268482490272 246 36 95 2 13 257 2800909 2800665 Frigoriglobus tundricola strain PL17 chromosome, complete genome blastn 1242 243 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Frigoriglobus Frigoriglobus tundricola
23167605 23167605 PRJNA1111082_P_NODE_12619_length_242_cov_0.923077_g12574_i0 PRJNA1111082 12619 242 0.923077 2.23384634 Lacipirellula parvula 2650471 Bacteria Bacteria 322 1.5e-83   NTclustered gi|1761017769|dbj|AP021861.1| 2650471 g12574 i0 90.833 1.1198347107438 240 22 99 0 1 240 529002 528763 Lacipirellula parvula PX69 DNA, complete genome blastn 271 322 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Lacipirellula Lacipirellula parvula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;