RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1111082" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111082 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2765911 2765911 PRJNA1111082_P_NODE_11103_length_249_cov_1.625000_g11058_i0 PRJNA1111082 11103 249 1.625 4.04625 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 263 9.56e-66   NTclustered gi|575456455|gb|CP007128.1| 861299 g11058 i0 85.83 76.6947791164659 247 35 99 0 3 249 4458012 4458258 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 19097 263 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
4042058 4042058 PRJNA1111082_P_NODE_12044_length_245_cov_0.906977_g11999_i0 PRJNA1111082 12044 245 0.906977 2.22209365 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 261 3.38e-65   NTclustered gi|2874253789|emb|OY969773.1| 412054 g11999 i0 87.179 1.9469387755102 234 24 95 5 12 243 98961 98732 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 477 261 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7868012 7868012 PRJNA1111082_P_NODE_12427_length_243_cov_0.917647_g12382_i0 PRJNA1111082 12427 243 0.917647 2.22988221 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 202 2.0599999999999995e-47   NTclustered gi|2874253789|emb|OY969773.1| 412054 g12382 i0 82.7 0.975308641975309 237 32 98 7 3 239 1018823 1019050 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 237 202 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9142885 9142885 PRJNA1111082_P_NODE_12028_length_245_cov_0.906977_g11983_i0 PRJNA1111082 12028 245 0.906977 2.22209365 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 252 2.0299999999999998e-62   NTclustered gi|575456455|gb|CP007128.1| 861299 g11983 i0 86.463 2.57142857142857 229 31 93 0 17 245 3862120 3861892 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 630 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
14244092 14244092 PRJNA1111082_P_NODE_12232_length_244_cov_0.912281_g12187_i0 PRJNA1111082 12232 244 0.912281 2.22596564 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 200 7.4299999999999985e-47   NTclustered gi|2874253789|emb|OY969773.1| 412054 g12187 i0 91.667 0.590163934426229 144 12 59 0 1 144 865039 865182 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 144 200 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16792408 16792408 PRJNA1111082_P_NODE_12674_length_242_cov_0.923077_g12629_i0 PRJNA1111082 12674 242 0.923077 2.23384634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 206 1.58e-48   NTclustered gi|2874253789|emb|OY969773.1| 412054 g12629 i0 88.068 1.33057851239669 176 18 71 3 5 177 1622167 1621992 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 322 206 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19341139 19341139 PRJNA1111082_P_NODE_12696_length_242_cov_0.923077_g12651_i0 PRJNA1111082 12696 242 0.923077 2.23384634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 82.4 2.78e-11   NTclustered gi|2874254107|emb|OY970192.1| 412054 g12651 i0 87.5 0.297520661157025 72 8 29 1 97 167 3775024 3775095 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 72 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;