RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1111082" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1111082 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7868022 7868022 PRJNA1111082_P_NODE_12847_length_236_cov_2.355828_g12802_i0 PRJNA1111082 12847 236 2.355828 5.55975408 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 87.9 5.8e-13   NTclustered gi|145515744|ref|XM_001443735.1| 5888 g12802 i0 100 0.199152542372881 47 0 20 0 161 207 674 628 Paramecium tetraurelia uncharacterized protein (GSPATT00011949001), partial mRNA blastn 47 87.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
14244310 14244310 PRJNA1111082_P_NODE_8192_length_283_cov_1.523810_g8147_i0 PRJNA1111082 8192 283 1.52381 4.3123823 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 523 4.5999999999999983e-144   NTclustered gi|10782|emb|X54004.1| 5908 g8147 i0 100 84.9010600706714 283 0 100 0 1 283 1924 1642 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 24027 523 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
20147632 20147632 PRJNA1111082_P_NODE_7376_length_297_cov_2.285714_g7331_i0 PRJNA1111082 7376 297 2.285714 6.78857058 root 1 Root_unresolved Root_unresolved 521 1.7499999999999996e-143   NTclustered gi|10782|emb|X54004.1| 5908 g7331 i0 98.322 61.9225589225589 298 4 100 1 1 297 2736 2439 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 18391 521 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
24441115 24441115 PRJNA1111082_P_NODE_10120_length_255_cov_2.142857_g10075_i0 PRJNA1111082 10120 255 2.142857 5.46428535 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 472 1.5e-128   NTclustered gi|11466252|ref|NC_000862.1| 5908 g10075 i0 100 19.7960784313725 255 0 100 0 1 255 2036 2290 Tetrahymena pyriformis mitochondrion, complete genome blastn 5048 472 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;