RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1111082" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA1111082 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8674473 8674473 PRJNA1111082_P_NODE_10507_length_252_cov_1.597765_g10462_i0 PRJNA1111082 10507 252 1.597765 4.0263678 Naegleria 5761 Heterolobosea other_Eukaryota 427 3.2499999999999993e-115   NTclustered gi|2618963742|gb|OR769034.1| 5762 g10462 i0 97.222 14.2460317460317 252 7 100 0 1 252 3906 3655 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 3590 427 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14244042 14244042 PRJNA1111082_P_NODE_10172_length_255_cov_1.285714_g10127_i0 PRJNA1111082 10172 255 1.285714 3.2785707 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 322 1.6e-83   NTclustered gi|38606344|gb|AY376152.1| 51634 g10127 i0 89.535 23.0235294117647 258 21 100 6 1 255 1053 799 Naegleria australiensis isolate 7857 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 5871 322 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
21892221 21892221 PRJNA1111082_P_NODE_6218_length_320_cov_1.493927_g6173_i0 PRJNA1111082 6218 320 1.493927 4.7805664 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.03   NTclustered gi|1031970221|gb|CP015655.1| 85057 g6173 i0 100 0.0875 28 0 9 0 57 84 50537 50510 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
24441279 24441279 PRJNA1111082_P_NODE_4860_length_357_cov_1.542254_g4815_i0 PRJNA1111082 4860 357 1.542254 5.50584678 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 603 7.439999999999999e-168   NTclustered gi|38606344|gb|AY376152.1| 51634 g4815 i0 97.191 19.3725490196078 356 10 99 0 2 357 49 404 Naegleria australiensis isolate 7857 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 6916 603 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;