RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1111082" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1111082 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4042147 4042147 PRJNA1111082_P_NODE_3324_length_421_cov_2.295977_g3279_i0 PRJNA1111082 3324 421 2.295977 9.66606317 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 649 0   NTclustered gi|1255287465|dbj|LC272073.1| 1525729 g3279 i0 94.774 75.7743467933492 421 15 100 6 1 421 1091 678 Ptolemeba bulliensis gene for 18S ribosomal RNA, partial sequence, strain: BA02 blastn 31901 649 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
5318186 5318186 PRJNA1111082_P_NODE_205_length_1147_cov_13.837058_g181_i0 PRJNA1111082 205 1147 13.837058 158.71105526 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 1596 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g181 i0 92.838 59.9459459459459 1103 58 95 21 2 1088 1101 4 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 68758 1596 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;