RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1111077" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1111077 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
214713 214713 PRJNA1111077_P_NODE_27021_length_262_cov_5.645503_g26800_i0 PRJNA1111077 27021 262 5.645503 14.79121786 Nitrospira sp. 70125 Bacteria Bacteria 292 1.2899999999999999e-74   NTclustered gi|2511635996|gb|CP126122.1| 70125 g26800 i0 86.973 3.01908396946565 261 32 99 2 2 262 2661237 2660979 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 791 292 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
2765152 2765152 PRJNA1111077_P_NODE_14583_length_310_cov_8.122363_g14362_i0 PRJNA1111077 14583 310 8.122363 25.1793253 Nitrospira sp. 70125 Bacteria Bacteria 239 2.07e-58   NTclustered gi|2511631678|gb|CP126123.1| 70125 g14362 i0 95.333 13.4322580645161 150 7 97 0 161 310 4131964 4132113 MAG: Nitrospira sp. isolate bin_003 chromosome, complete genome blastn 4164 239 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
4041295 4041295 PRJNA1111077_P_NODE_14884_length_310_cov_4.485232_g14663_i0 PRJNA1111077 14884 310 4.485232 13.9042192 Nitrospira sp. 70125 Bacteria Bacteria 207 5.84e-49   NTclustered gi|2511631678|gb|CP126123.1| 70125 g14663 i0 77.982 2.22258064516129 327 55 100 2 1 310 1697255 1697581 MAG: Nitrospira sp. isolate bin_003 chromosome, complete genome blastn 689 207 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
19340501 19340501 PRJNA1111077_P_NODE_21496_length_282_cov_1.387560_g21275_i0 PRJNA1111077 21496 282 1.38756 3.9129192 Nitrospira sp. 70125 Bacteria Bacteria 206 1.8899999999999994e-48   NTclustered gi|2511635996|gb|CP126122.1| 70125 g21275 i0 80.597 0.950354609929078 268 50 95 2 2 268 1238004 1238270 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 268 206 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
25247571 25247571 PRJNA1111077_P_NODE_36920_length_240_cov_3.856287_g36699_i0 PRJNA1111077 36920 240 3.856287 9.2550888 Nitrospira 1234 Bacteria Bacteria 438 1.4199999999999995e-118   NTclustered gi|2194436381|gb|CP092080.1| 70125 g36699 i0 99.583 200.020833333333 240 1 100 0 1 240 1558720 1558959 MAG: Nitrospira sp. isolate UBC1 chromosome blastn 48005 438 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;