RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1111077" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 11 ✖

bioproject 1

  • PRJNA1111077 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
214783 214783 PRJNA1111077_P_NODE_29581_length_252_cov_4.162011_g29360_i0 PRJNA1111077 29581 252 4.162011 10.48826772 Sneathia vaginalis 187101 Bacteria Bacteria 460 3.2e-125   NTclustered gi|808076794|gb|CP011280.1| 187101 g29360 i0 99.603 250.083333333333 252 1 100 0 1 252 160286 160035 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 63021 460 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
1489348 1489348 PRJNA1111077_P_NODE_22742_length_278_cov_1.287805_g22521_i0 PRJNA1111077 22742 278 1.287805 3.5800979 Leptotrichia wadei 157687 Bacteria Bacteria 481 2.75e-131   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g22521 i0 97.842 173.63309352518 278 6 100 0 1 278 219829 219552 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 48270 481 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
8674354 8674354 PRJNA1111077_P_NODE_31927_length_248_cov_1.760000_g31706_i0 PRJNA1111077 31927 248 1.76 4.3648 Fusobacterium 848 Bacteria Bacteria 459 1.13e-124   NTclustered gi|2704983719|gb|CP077132.1| 851 g31706 i0 100 99.9395161290323 248 0 100 0 1 248 1599969 1600216 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 24785 459 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
9142265 9142265 PRJNA1111077_P_NODE_22528_length_278_cov_3.136585_g22307_i0 PRJNA1111077 22528 278 3.136585 8.7197063 Sneathia vaginalis 187101 Bacteria Bacteria 514 2.7199999999999996e-141   NTclustered gi|808076794|gb|CP011280.1| 187101 g22307 i0 100 177.679856115108 278 0 100 0 1 278 160396 160673 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 49395 514 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
15517703 15517703 PRJNA1111077_P_NODE_6773_length_445_cov_2.094086_g6552_i0 PRJNA1111077 6773 445 2.094086 9.3186827 Fusobacterium polymorphum 76857 Bacteria Bacteria 789 0   NTclustered gi|2706426664|gb|CP077146.1| 76857 g6552 i0 98.652 498.168539325843 445 6 100 0 1 445 338044 338488 Fusobacterium polymorphum strain KCOM2500 chromosome, complete genome blastn 221685 789 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
16791782 16791782 PRJNA1111077_P_NODE_22354_length_279_cov_1.495146_g22133_i0 PRJNA1111077 22354 279 1.495146 4.17145734 Fusobacterium animalis 76859 Bacteria Bacteria 505 1.6399999999999995e-138   NTclustered gi|2706489692|gb|CP084149.1| 76859 g22133 i0 99.283 63.989247311828 279 2 100 0 1 279 444717 444439 Fusobacterium animalis strain KCOM2877 chromosome, complete genome blastn 17853 505 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
19340894 19340894 PRJNA1111077_P_NODE_37996_length_227_cov_3.000000_g37775_i0 PRJNA1111077 37996 227 3 6.81 Sneathia vaginalis 187101 Bacteria Bacteria 420 4.81e-113   NTclustered gi|808076794|gb|CP011280.1| 187101 g37775 i0 100 461.929515418502 227 0 100 0 1 227 161075 160849 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 104858 420 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
19340960 19340960 PRJNA1111077_P_NODE_5736_length_479_cov_2.519704_g5515_i0 PRJNA1111077 5736 479 2.519704 12.06938216 Sneathia vaginalis 187101 Bacteria Bacteria 885 0   NTclustered gi|2769795739|gb|CP160094.1| 187101 g5515 i0 100 367.131524008351 479 0 100 0 1 479 3157 3635 Sneathia vaginalis strain CCUG_64370 chromosome, complete genome blastn 175856 885 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
24440717 24440717 PRJNA1111077_P_NODE_29220_length_254_cov_1.491713_g28999_i0 PRJNA1111077 29220 254 1.491713 3.78895102 Leptotrichia hongkongensis 554406 Bacteria Bacteria 470 5.37e-128   NTclustered gi|1708587163|dbj|AP019846.1| 554406 g28999 i0 100 14.1968503937008 254 0 100 0 1 254 1250256 1250003 Leptotrichia hongkongensis JMUB5056 DNA, complete genome blastn 3606 470 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis
25247392 25247392 PRJNA1111077_P_NODE_14240_length_313_cov_3.725000_g14019_i0 PRJNA1111077 14240 313 3.725 11.65925 Fusobacterium 848 Bacteria Bacteria 579 1.0899999999999999e-160   NTclustered gi|2704968189|gb|CP077126.1| 851 g14019 i0 100 493 313 0 100 0 1 313 1546216 1545904 Fusobacterium nucleatum strain KCOM3685 chromosome, complete genome blastn 154309 579 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
25247594 25247594 PRJNA1111077_P_NODE_5660_length_482_cov_3.251834_g5439_i0 PRJNA1111077 5660 482 3.251834 15.67383988 Fusobacterium 848 Bacteria Bacteria 878 0   NTclustered gi|1370537877|gb|CP028108.1| 860 g5439 i0 99.584 478.074688796681 481 2 99 0 2 482 462069 461589 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 230432 883 0.994337485843715 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;