RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1111077" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA1111077 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7867349 7867349 PRJNA1111077_P_NODE_20367_length_285_cov_5.084906_g20146_i0 PRJNA1111077 20367 285 5.084906 14.4919821 Chlamydomonas reinhardtii 3055 Plants Plants 69.4 2.61e-7   NTclustered gi|2082252490|ref|XM_043064992.1| 3055 g20146 i0 100 0.129824561403509 37 0 13 0 27 63 866 902 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_08g369200v5), mRNA blastn 37 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
11693489 11693489 PRJNA1111077_P_NODE_30670_length_250_cov_1.491525_g30449_i0 PRJNA1111077 30670 250 1.491525 3.7288125 Coccomyxa subellipsoidea 248742 Plants Plants 231 2.7099999999999996e-56   NTclustered gi|545370874|ref|XM_005649985.1| 574566 g30449 i0 86.73 3.928 211 25 83 2 30 237 4180 3970 Coccomyxa subellipsoidea C-169 hypothetical protein partial mRNA blastn 982 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
12968390 12968390 PRJNA1111077_P_NODE_18251_length_293_cov_4.027273_g18030_i0 PRJNA1111077 18251 293 4.027273 11.79990989 Chlorella variabilis 554065 Plants Plants 124 5.68e-24   NTclustered gi|552825916|ref|XM_005846855.1| 554065 g18030 i0 84.252 10.1399317406143 127 20 43 0 143 269 223 97 Chlorella variabilis hypothetical protein (CHLNCDRAFT_134811) mRNA, complete cds blastn 2971 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
12968518 12968518 PRJNA1111077_P_NODE_23851_length_274_cov_1.432836_g23630_i0 PRJNA1111077 23851 274 1.432836 3.92597064 Coccomyxa subellipsoidea 248742 Plants Plants 62.1 4.18e-5   NTclustered gi|545365919|ref|XM_005647835.1| 574566 g23630 i0 95 2.15693430656934 40 1 14 1 40 78 408 447 Coccomyxa subellipsoidea C-169 hypothetical protein partial mRNA blastn 591 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
14243679 14243679 PRJNA1111077_P_NODE_30752_length_250_cov_0.870056_g30531_i0 PRJNA1111077 30752 250 0.870056 2.17514 Coccomyxa subellipsoidea 248742 Plants Plants 108 4.76e-19   NTclustered gi|545354088|ref|XM_005642822.1| 574566 g30531 i0 90.244 0.328 82 8 33 0 95 176 1077 1158 Coccomyxa subellipsoidea C-169 aspartate aminotransferase mRNA blastn 82 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
16323637 16323637 PRJNA1111077_P_NODE_25313_length_269_cov_1.316327_g25092_i0 PRJNA1111077 25313 269 1.316327 3.54091963 Characiosiphonaceae 167773 Plants Plants 183 8.38e-42   NTclustered gi|15281654|gb|AF395494.1| 167770 g25092 i0 79.487 66.5687732342007 273 45 100 7 1 269 1729 1464 Characiosiphon rivularis strain UTEX LB 1763 26S ribosomal RNA gene, partial sequence blastn 17907 183 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Characiosiphonaceae Characiosiphon Characiosiphon rivularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;