RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1111077" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1111077 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1489274 1489274 PRJNA1111077_P_NODE_19802_length_287_cov_3.308411_g19581_i0 PRJNA1111077 19802 287 3.308411 9.49513957 Cochliopodium spiniferum 313558 Discosea other_Eukaryota 412 1.0599999999999996e-110   NTclustered gi|330902897|gb|JF298273.1| 313558 g19581 i0 92.657 95.4216027874565 286 21 99 0 2 287 259 544 Cochliopodium spiniferum clone 5102 actin gene, partial cds blastn 27386 412 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium spiniferum
4041451 4041451 PRJNA1111077_P_NODE_21124_length_283_cov_1.514286_g20903_i0 PRJNA1111077 21124 283 1.514286 4.28542938 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 496 1e-135   NTclustered gi|330902855|gb|JF298253.1| 1017091 g20903 i0 98.239 13.1095406360424 284 3 100 2 1 283 80 362 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 3710 496 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
7398995 7398995 PRJNA1111077_P_NODE_4346_length_542_cov_1.321962_g4125_i0 PRJNA1111077 4346 542 1.321962 7.16503404 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 641 2.49e-179   NTclustered gi|33946348|gb|AY294153.1| 197527 g4125 i0 88.007 99.4059040590406 542 65 100 0 1 542 376 917 Platyamoeba placida actin mRNA, partial cds blastn 53878 641 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
9142361 9142361 PRJNA1111077_P_NODE_25948_length_266_cov_2.326425_g25727_i0 PRJNA1111077 25948 266 2.326425 6.1882905 Heterostelium album 2086695 Evosea other_Eukaryota 143 1.3999999999999996e-29   NTclustered gi|1160570380|ref|XM_020574684.1| 670386 g25727 i0 76.604 0.996240601503759 265 58 99 4 1 263 205 467 Polysphondylium pallidum PN500 vacuolar ATPase proteolipid subunit (vatP), partial mRNA blastn 265 143 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
10417962 10417962 PRJNA1111077_P_NODE_17169_length_300_cov_1.911894_g16948_i0 PRJNA1111077 17169 300 1.911894 5.735682 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 252 2.56e-62   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g16948 i0 82.5 48.2233333333333 320 24 99 24 1 298 6953 6644 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14467 252 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
11693190 11693190 PRJNA1111077_P_NODE_18390_length_292_cov_5.013699_g18169_i0 PRJNA1111077 18390 292 5.013699 14.64000108 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 375 1.4099999999999998e-99   NTclustered gi|300078498|gb|GU001160.1| 5755 g18169 i0 89.375 14.1917808219178 320 5 100 13 1 292 6142 6460 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4144 375 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14243524 14243524 PRJNA1111077_P_NODE_24492_length_272_cov_1.020101_g24271_i0 PRJNA1111077 24492 272 1.020101 2.77467472 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 420 5.94e-113   NTclustered gi|62910949|gb|AY925001.1| 5778 g24271 i0 94.485 1.15441176470588 272 15 100 0 1 272 16 287 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 314 420 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20615750 20615750 PRJNA1111077_P_NODE_20797_length_284_cov_1.706161_g20576_i0 PRJNA1111077 20797 284 1.706161 4.84549724 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 440 4.789999999999998e-119   NTclustered gi|300078498|gb|GU001160.1| 5755 g20576 i0 94.257 1.04225352112676 296 4 100 4 1 284 5925 5631 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 296 440 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;