RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 8 ✖

bioproject 1

  • PRJNA1108487 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213412 213412 PRJNA1108487_P_NODE_4281_length_336_cov_1.802281_g4215_i0 PRJNA1108487 4281 336 1.802281 6.05566416 Augustepiccardvirus augustepiccard 3426500 Viruses Viruses 58.4 6.81e-4   NTclustered gi|2071739426|gb|MZ501051.1| 2851954 g4215 i0 84.483 0.172619047619048 58 9 17 0 246 303 7967 8024 Escherichia phage AugustePiccard strain Bas01, complete genome blastn 58 58.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Drexlerviridae Augustepiccardvirus Augustepiccardvirus augustepiccard
11692116 11692116 PRJNA1108487_P_NODE_5410_length_305_cov_2.017241_g5344_i0 PRJNA1108487 5410 305 2.017241 6.15258505 Caudoviricetes sp. 2832643 Viruses Viruses 54.7 0.008   NTclustered gi|2058041910|tpg|BK042357.1| 2832643 g5344 i0 100 0.462295081967213 29 0 10 0 110 138 32096 32068 MAG TPA_asm: Caudoviricetes sp. isolate ctpLI1, partial genome blastn 141 54.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
12499424 12499424 PRJNA1108487_P_NODE_6490_length_282_cov_1.220096_g6424_i0 PRJNA1108487 6490 282 1.220096 3.44067072 Chatterjeevirus 2732679 Viruses Viruses 52.8 0.026   NTclustered gi|325171272|ref|NC_015159.1| 979535 g6424 i0 100 1.68794326241135 28 0 10 0 78 105 20990 21017 Vibrio phage ICP3, complete genome blastn 476 52.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Chatterjeevirus Chatterjeevirus ICP3
14242223 14242223 PRJNA1108487_P_NODE_5032_length_314_cov_1.543568_g4966_i0 PRJNA1108487 5032 314 1.543568 4.84680352 Caudoviricetes sp. 2832643 Viruses Viruses 56.5 0.002   NTclustered gi|2914860368|gb|OR222087.1| 2832643 g4966 i0 100 0.0955414012738854 30 0 10 0 239 268 212098 212127 MAG: Caudoviricetes sp. isolate MSP0025 genomic sequence blastn 30 56.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
18065151 18065151 PRJNA1108487_P_NODE_9875_length_247_cov_0.896552_g9809_i0 PRJNA1108487 9875 247 0.896552 2.21448344 Snakehead retrovirus 40270 Viruses Viruses 457 4.05e-124   NTclustered gi|9628892|ref|NC_001724.1| 40270 g9809 i0 100 2 247 0 100 0 1 247 8274 8520 Snakehead retrovirus, complete genome blastn 494 457 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Snakehead retrovirus
20614539 20614539 PRJNA1108487_P_NODE_17_length_3045_cov_11.845559_g13_i0 PRJNA1108487 17 3045 11.845559 360.69727155 Redspotted grouper nervous necrosis virus 143919 Viruses Viruses 5502 0   NTclustered gi|156076357|gb|EF558368.1| 143919 g13 i0 99.278 99.071921182266 3045 22 100 0 1 3045 3057 13 Redspotted grouper nervous necrosis virus isolate China 1 RNA-dependent RNA polymerase gene, complete cds blastn 301674 5502 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales Nodaviridae Betanodavirus Redspotted grouper nervous necrosis virus
22697537 22697537 PRJNA1108487_P_NODE_178_length_1328_cov_14.647012_g143_i0 PRJNA1108487 178 1328 14.647012 194.51231936 Redspotted grouper nervous necrosis virus 143919 Viruses Viruses 2398 0   NTclustered gi|98960854|ref|NC_008041.1| 143919 g143 i0 99.247 96.0873493975904 1328 10 100 0 1 1328 11 1338 Redspotted grouper nervous necrosis virus RNA 2, complete sequence blastn 127604 2398 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales Nodaviridae Betanodavirus Redspotted grouper nervous necrosis virus
23165717 23165717 PRJNA1108487_P_NODE_10039_length_246_cov_2.138728_g9973_i0 PRJNA1108487 10039 246 2.138728 5.26127088 Dulem virus 38 3145756 Viruses Viruses 76.8 1.32e-9   NTclustered gi|2750935572|gb|PP511596.1| 3145756 g9973 i0 90.164 0.247967479674797 61 2 24 4 45 103 32822 32764 Dulem virus 38 isolate Duke_24SF_44, complete genome blastn 61 76.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Dulem virus 38

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;