RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108487 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7398388 7398388 PRJNA1108487_P_NODE_7426_length_266_cov_1.616580_g7360_i0 PRJNA1108487 7426 266 1.61658 4.3001028 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.2 1.45e-4   NTclustered gi|2224869|gb|U53001.1|DLU53001 27895 g7360 i0 100 12.2330827067669 32 0 12 0 74 105 111 80 Dendrocoelum lacteum ribosomal RNA large subunit gene, partial sequence blastn 3254 60.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dendrocoelidae Dendrocoelum Dendrocoelum lacteum
21890242 21890242 PRJNA1108487_P_NODE_3298_length_375_cov_3.377483_g3232_i0 PRJNA1108487 3298 375 3.377483 12.66556125 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 638 2.15e-178   NTclustered gi|68479954|gb|DQ076149.1| 6182 g3232 i0 97.333 1 375 10 100 0 1 375 13 387 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 375 638 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
22697553 22697553 PRJNA1108487_P_NODE_8698_length_252_cov_0.871508_g8632_i0 PRJNA1108487 8698 252 0.871508 2.19620016 Metazoa 33208 Platyhelminthes Platyhelminthes 466 6.89e-127   NTclustered gi|60687563|gb|AY914894.1| 6182 g8632 i0 100 100 252 0 100 0 1 252 269 520 Schistosoma japonicum unknown mRNA blastn 25200 466 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;