RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213446 213446 PRJNA1108487_P_NODE_9581_length_248_cov_0.891429_g9515_i0 PRJNA1108487 9581 248 0.891429 2.21074392 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.04e-5   NTclustered gi|294886904|ref|XM_002771866.1| 423536 g9515 i0 97.297 0.262096774193548 37 1 15 0 42 78 1883 1919 Perkinsus marinus ATCC 50983 protein arginine n-methyltransferase, putative, mRNA blastn 65 63.9 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
21890227 21890227 PRJNA1108487_P_NODE_1258_length_591_cov_9.851351_g1193_i0 PRJNA1108487 1258 591 9.851351 58.22148441 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 313 2.43e-80   NTclustered gi|294891115|ref|XM_002773382.1| 423536 g1193 i0 82.432 64.6142131979695 370 53 62 12 132 495 438 75 Perkinsus marinus ATCC 50983 ribosomal protein S23, putative, mRNA blastn 38187 313 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;