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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213406 213406 PRJNA1108487_P_NODE_281_length_1125_cov_2.383080_g242_i0 PRJNA1108487 281 1125 2.38308 26.80965 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 579 4.2499999999999985e-160   NTclustered gi|813110813|ref|XM_012339619.1| 695850 g242 i0 78.141 82.712 947 182 83 21 190 1125 1161 229 Saprolegnia parasitica CBS 223.65 isocitrate dehydrogenase mRNA blastn 93051 579 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
1488091 1488091 PRJNA1108487_P_NODE_2602_length_420_cov_2.011527_g2536_i0 PRJNA1108487 2602 420 2.011527 8.4484134 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 244 6.22e-60   NTclustered gi|2795030183|ref|XM_067927740.1| 4785 g2536 i0 78.976 29.2952380952381 371 68 86 8 32 394 667 1035 Phytophthora cinnamomi Guanine nucleotide-binding protein subunit beta (IUM83_03712), partial mRNA blastn 12304 244 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
1488103 1488103 PRJNA1108487_P_NODE_3982_length_347_cov_1.138686_g3916_i0 PRJNA1108487 3982 347 1.138686 3.95124042 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 224 6.579999999999998e-54   NTclustered gi|675169410|ref|XM_008895342.1| 761204 g3916 i0 80.903 68.3775216138329 288 52 82 2 29 313 590 303 Phytophthora parasitica INRA-310 adenosylhomocysteinase mRNA blastn 23727 224 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
2764143 2764143 PRJNA1108487_P_NODE_3063_length_388_cov_2.790476_g2997_i0 PRJNA1108487 3063 388 2.790476 10.82704688 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 300 1.2e-76   NTclustered gi|669149341|ref|XM_008612011.1| 1156394 g2997 i0 83.333 70.5077319587629 324 54 84 0 1 324 405 82 Saprolegnia diclina VS20 Ras-like GTP-binding protein YPT1 mRNA blastn 27357 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
2764151 2764151 PRJNA1108487_P_NODE_4103_length_342_cov_4.171004_g4037_i0 PRJNA1108487 4103 342 4.171004 14.26483368 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 261 4.93e-65   NTclustered gi|695460853|ref|XM_009539792.1| 67593 g4037 i0 82.653 15.7134502923977 294 51 86 0 36 329 309 16 Phytophthora sojae hypothetical protein mRNA blastn 5374 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
4040232 4040232 PRJNA1108487_P_NODE_5664_length_299_cov_1.592920_g5598_i0 PRJNA1108487 5664 299 1.59292 4.7628308 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 178 4.4e-40   NTclustered gi|166051101|emb|CU363198.1| 100861 g5598 i0 84.239 3.07357859531773 184 27 61 2 117 299 528 710 Aphanomyces euteiches cDNA blastn 919 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
5316322 5316322 PRJNA1108487_P_NODE_5465_length_304_cov_1.350649_g5399_i0 PRJNA1108487 5465 304 1.350649 4.10597296 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 235 2.62e-57   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g5399 i0 80.719 32.5822368421053 306 55 100 4 1 304 160 463 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 9905 235 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
6591519 6591519 PRJNA1108487_P_NODE_3446_length_368_cov_2.803390_g3380_i0 PRJNA1108487 3446 368 2.80339 10.3164752 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 163 1.5499999999999998e-35   NTclustered gi|301093299|ref|XM_002997452.1| 403677 g3380 i0 82.292 2.52717391304348 192 30 52 4 1 190 358 169 Phytophthora infestans T30-4 nascent polypeptide-associated complex subunit alpha-like protein, putative (PITG_19008), partial mRNA blastn 930 163 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
6591527 6591527 PRJNA1108487_P_NODE_5246_length_309_cov_1.322034_g5180_i0 PRJNA1108487 5246 309 1.322034 4.08508506 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 147 1.29e-30   NTclustered gi|2795045367|ref|XM_067939679.1| 4785 g5180 i0 78.879 3.50485436893204 232 38 74 9 74 301 46 270 Phytophthora cinnamomi transitional endoplasmic reticulum ATPase (IUM83_14904), partial mRNA blastn 1083 147 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7866152 7866152 PRJNA1108487_P_NODE_1107_length_630_cov_1.676840_g1044_i0 PRJNA1108487 1107 630 1.67684 10.564092 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 346 2.56e-90   NTclustered gi|2795023275|ref|XM_067929756.1| 4785 g1044 i0 83.651 56.8095238095238 367 60 58 0 264 630 941 575 Phytophthora cinnamomi serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (IUM83_05609), partial mRNA blastn 35790 346 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
11692093 11692093 PRJNA1108487_P_NODE_1990_length_482_cov_2.317848_g1924_i0 PRJNA1108487 1990 482 2.317848 11.17202736 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 163 2.08e-35   NTclustered gi|669138905|ref|XM_008606799.1| 1156394 g1924 i0 80.18 0.518672199170125 222 40 46 4 263 482 1499 1280 Saprolegnia diclina VS20 seryl-tRNA synthetase mRNA blastn 250 163 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
11692109 11692109 PRJNA1108487_P_NODE_4150_length_340_cov_5.400749_g4084_i0 PRJNA1108487 4150 340 5.400749 18.3625466 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 292 1.74e-74   NTclustered gi|2289|emb|X59936.1| 4766 g4084 i0 87.649 72.2382352941176 251 31 74 0 3 253 251 1 A.bisexualis gene for actin blastn 24561 292 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
12499428 12499428 PRJNA1108487_P_NODE_8710_length_252_cov_0.871508_g8644_i0 PRJNA1108487 8710 252 0.871508 2.19620016 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 130 1.03e-25   NTclustered gi|813187256|ref|XM_012352047.1| 695850 g8644 i0 87.5 7.26190476190476 112 14 44 0 28 139 168 57 Saprolegnia parasitica CBS 223.65 actin-like protein 2/3 complex subunit 4 mRNA blastn 1830 130 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
15516010 15516010 PRJNA1108487_P_NODE_1033_length_648_cov_10.180870_g970_i0 PRJNA1108487 1033 648 10.18087 65.9720376 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 244 9.91e-60   NTclustered gi|673039884|ref|XM_008875681.1| 157072 g970 i0 77.305 13.3117283950617 423 90 65 6 21 440 31 450 Aphanomyces invadans 60S ribosomal protein mRNA blastn 8626 244 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
16790586 16790586 PRJNA1108487_P_NODE_6594_length_280_cov_1.014493_g6528_i0 PRJNA1108487 6594 280 1.014493 2.8405804 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 193 1.46e-44   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g6528 i0 80.309 66.3642857142857 259 47 92 3 1 257 621 365 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 18582 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
18065117 18065117 PRJNA1108487_P_NODE_4855_length_319_cov_1.264228_g4789_i0 PRJNA1108487 4855 319 1.264228 4.03288732 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 178 4.73e-40   NTclustered gi|2794921692|ref|XM_067881078.1| 164328 g4789 i0 85.465 2.6833855799373 172 23 54 2 109 279 166 336 Phytophthora ramorum V-type proton ATPase 16 kDa proteolipid subunit (KRP23_10609), partial mRNA blastn 856 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
18872163 18872163 PRJNA1108487_P_NODE_8235_length_253_cov_2.522222_g8169_i0 PRJNA1108487 8235 253 2.522222 6.38122166 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 182 2.81e-41   NTclustered gi|169305|gb|M83535.1|PHTCALPIA 4787 g8169 i0 90.511 45.2411067193676 137 13 54 0 117 253 1170 1034 P.infestans calmodulin (calA) gene, complete cds blastn 11446 183 0.994535519125683 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
19339283 19339283 PRJNA1108487_P_NODE_2976_length_393_cov_1.296875_g2910_i0 PRJNA1108487 2976 393 1.296875 5.09671875 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 222 2.71e-53   NTclustered gi|673036227|ref|XM_008873853.1| 157072 g2910 i0 84.12 33.4783715012723 233 34 59 2 17 246 239 471 Aphanomyces invadans adenosylhomocysteinase 2 mRNA blastn 13157 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
20614580 20614580 PRJNA1108487_P_NODE_7877_length_259_cov_1.677419_g7811_i0 PRJNA1108487 7877 259 1.677419 4.34451521 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 250 7.79e-62   NTclustered gi|2794905809|ref|XM_067889902.1| 164328 g7811 i0 84.585 86.3011583011583 253 37 97 2 6 257 312 61 Phytophthora ramorum 13 kDa ribonucleoprotein-associated protein (KRP23_4892), partial mRNA blastn 22352 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
24439336 24439336 PRJNA1108487_P_NODE_3900_length_350_cov_1.126354_g3834_i0 PRJNA1108487 3900 350 1.126354 3.942239 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 254 8.44e-63   NTclustered gi|2794906059|ref|XM_067889971.1| 164328 g3834 i0 80.403 39.2971428571429 347 56 97 8 1 341 603 263 Phytophthora ramorum Aconitate hydratase, mitochondrial (KRP23_4954), partial mRNA blastn 13754 254 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;