RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108487 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11223986 11223986 PRJNA1108487_P_NODE_6429_length_283_cov_1.485714_g6363_i0 PRJNA1108487 6429 283 1.485714 4.20457062 Caenorhabditis 6237 Nematoda Nematoda 161 4.159999999999999e-35   NTclustered gi|268577906|ref|XM_002643890.1| 6238 g6363 i0 86.806 13.3710247349823 144 19 51 0 140 283 692 549 Caenorhabditis briggsae Protein CBR-FTT-2 (Cbr-ftt-2), partial mRNA blastn 3784 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11692125 11692125 PRJNA1108487_P_NODE_7350_length_267_cov_1.608247_g7284_i0 PRJNA1108487 7350 267 1.608247 4.29401949 Caenorhabditis briggsae 6238 Nematoda Nematoda 102 2.39e-17   NTclustered gi|268579136|ref|XM_002644505.1| 6238 g7284 i0 80.137 20.7640449438202 146 21 53 7 63 204 199 58 Caenorhabditis briggsae Protein CBR-PDI-2 (Cbr-pdi-2), partial mRNA blastn 5544 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
13773865 13773865 PRJNA1108487_P_NODE_6511_length_281_cov_1.903846_g6445_i0 PRJNA1108487 6511 281 1.903846 5.34980726 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.007   NTclustered gi|1376141561|ref|XM_024651035.1| 34506 g6445 i0 96.875 10.3451957295374 32 1 11 0 136 167 771 802 Strongyloides ratti BTB/POZ-like domain and BTB/POZ fold domain and BTB/POZ domain-containing protein (SRAE_2000023100), partial mRNA blastn 2907 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15516030 15516030 PRJNA1108487_P_NODE_3533_length_365_cov_1.065068_g3467_i0 PRJNA1108487 3533 365 1.065068 3.8874982 Caenorhabditis brenneri 135651 Nematoda Nematoda 250 1.14e-61   NTclustered gi|241017545|gb|GQ169498.1| 135651 g3467 i0 79.942 111.427397260274 344 65 94 4 24 365 342 1 Caenorhabditis brenneri clone T4AA06.09 putative ubiquitin family protein mRNA, partial cds blastn 40671 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;