RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108487 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2296040 2296040 PRJNA1108487_P_NODE_5682_length_299_cov_1.296460_g5616_i0 PRJNA1108487 5682 299 1.29646 3.8764154 Haliotis 6452 Mollusca Mollusca 62.1 4.62e-5   NTclustered gi|2245713663|ref|XM_046510094.2| 6454 g5616 i0 100 5.70903010033445 33 0 11 0 13 45 837 805 PREDICTED: Haliotis rufescens zinc finger protein mnm-2-like (LOC124141900), transcript variant X2, mRNA blastn 1707 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
12967274 12967274 PRJNA1108487_P_NODE_4771_length_321_cov_1.681452_g4705_i0 PRJNA1108487 4771 321 1.681452 5.39746092 Bradybaena similaris 145626 Mollusca Mollusca 154 8.03e-33   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g4705 i0 80.711 32.2679127725857 197 38 61 0 122 318 47027863 47028059 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 10358 154 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
16790583 16790583 PRJNA1108487_P_NODE_5954_length_292_cov_3.077626_g5888_i0 PRJNA1108487 5954 292 3.077626 8.98666792 Argopecten irradians 31199 Mollusca Mollusca 244 4.1599999999999996e-60   NTclustered gi|2835375301|ref|XM_069262051.1| 31199 g5888 i0 82.069 52.9794520547945 290 48 99 4 1 288 216 503 PREDICTED: Argopecten irradians ras-related protein Rab-1A (LOC138319120), mRNA blastn 15470 244 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
18065131 18065131 PRJNA1108487_P_NODE_6955_length_273_cov_2.180000_g6889_i0 PRJNA1108487 6955 273 2.18 5.9514 Haliotis rufescens 6454 Mollusca Mollusca 176 1.43e-39   NTclustered gi|2245706702|ref|XM_046511450.2| 6454 g6889 i0 80.617 50.6227106227106 227 44 83 0 15 241 289 63 PREDICTED: Haliotis rufescens tubulin beta chain-like (LOC124142789), transcript variant X3, mRNA blastn 13820 176 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
19339319 19339319 PRJNA1108487_P_NODE_8556_length_252_cov_0.871508_g8490_i0 PRJNA1108487 8556 252 0.871508 2.19620016 Saccostrea echinata 191078 Mollusca Mollusca 180 1e-40   NTclustered gi|2628609644|ref|XM_061311846.1| 191078 g8490 i0 84.916 71.4325396825397 179 25 71 2 75 252 325 148 PREDICTED: Saccostrea echinata histone H2B-like (LOC133176776), mRNA blastn 18001 180 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
21890215 21890215 PRJNA1108487_P_NODE_10438_length_245_cov_0.906977_g10372_i0 PRJNA1108487 10438 245 0.906977 2.22209365 Mytilus californianus 6549 Mollusca Mollusca 274 4.34e-69   NTclustered gi|2334759907|ref|XR_007983480.1| 6549 g10372 i0 86.939 8.79183673469388 245 31 100 1 1 245 564 321 PREDICTED: Mytilus californianus uncharacterized LOC127704750 (LOC127704750), ncRNA blastn 2154 274 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;