RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213402 213402 PRJNA1108487_P_NODE_2161_length_461_cov_3.319588_g2095_i0 PRJNA1108487 2161 461 3.319588 15.30330068 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 259 2.46e-64   NTclustered gi|470420864|ref|XM_004337293.1| 1257118 g2095 i0 82.026 50.0802603036876 306 53 66 2 1 305 328 24 Acanthamoeba castellanii str. Neff Peptidylprolyl cis-trans isomerase (ACA1_221090), partial mRNA blastn 23087 259 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5316314 5316314 PRJNA1108487_P_NODE_3805_length_353_cov_1.489286_g3739_i0 PRJNA1108487 3805 353 1.489286 5.25717958 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 58.4 7.17e-4   NTclustered gi|470469416|ref|XM_004341948.1| 1257118 g3739 i0 83.077 0.18413597733711 65 9 18 2 216 279 884 821 Acanthamoeba castellanii str. Neff MORN repeatcontaining protein (ACA1_050500), partial mRNA blastn 65 58.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6591538 6591538 PRJNA1108487_P_NODE_726_length_758_cov_18.759124_g667_i0 PRJNA1108487 726 758 18.759124 142.19415992 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 344 1.12e-89   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g667 i0 79.31 61.0488126649077 522 85 67 18 197 707 522 13 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 46275 344 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15516043 15516043 PRJNA1108487_P_NODE_533_length_875_cov_2.316708_g480_i0 PRJNA1108487 533 875 2.316708 20.271195 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 544 1.19e-149   NTclustered gi|470510585|ref|XM_004351497.1| 1257118 g480 i0 78.207 92.2822857142857 881 170 99 16 6 875 493 1362 Acanthamoeba castellanii str. Neff transport protein Sec61 alpha subunit, putative (ACA1_149400), partial mRNA blastn 80747 544 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24439300 24439300 PRJNA1108487_P_NODE_1020_length_652_cov_2.027634_g957_i0 PRJNA1108487 1020 652 2.027634 13.22017368 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 355 4.41e-93   NTclustered gi|470512227|ref|XM_004352398.1| 1257118 g957 i0 78.061 75.0061349693252 588 112 89 13 17 597 31 608 Acanthamoeba castellanii str. Neff succinyl coenzyme A synthetase alpha subunit (ACA1_359750), partial mRNA blastn 48904 355 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;