RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108487 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10416840 10416840 PRJNA1108487_P_NODE_1969_length_484_cov_2.836983_g1903_i0 PRJNA1108487 1969 484 2.836983 13.73099772 Fimicolochytrium jonesii 1396493 Fungi Fungi 283 1.54e-71   NTclustered gi|2432061697|ref|XM_053067628.1| 1396493 g1903 i0 77.547 17.1177685950413 481 100 99 8 8 484 519 43 Fimicolochytrium jonesii translation protein SH3-like domain-containing protein (EV422DRAFT_492826), partial mRNA blastn 8285 283 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
10416881 10416881 PRJNA1108487_P_NODE_7889_length_259_cov_1.655914_g7823_i0 PRJNA1108487 7889 259 1.655914 4.28881726 Spizellomyces punctatus 109760 Fungi Fungi 183 8.02e-42   NTclustered gi|1026980085|ref|XM_016752373.1| 645134 g7823 i0 82.609 79.6216216216216 207 36 80 0 50 256 502 296 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S15 (SPPG_04127), mRNA blastn 20622 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
14242236 14242236 PRJNA1108487_P_NODE_7012_length_273_cov_1.095000_g6946_i0 PRJNA1108487 7012 273 1.095 2.98935 Polychytrium aggregatum 110093 Fungi Fungi 167 8.579999999999999e-37   NTclustered gi|2432151864|ref|XM_053111326.1| 110093 g6946 i0 77.903 4.64468864468865 267 59 98 0 1 267 738 472 Polychytrium aggregatum glucosamine-6-phosphate isomerase (BJ171DRAFT_508873), mRNA blastn 1268 167 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
16323099 16323099 PRJNA1108487_P_NODE_1293_length_586_cov_1.668616_g1228_i0 PRJNA1108487 1293 586 1.668616 9.77808976 Spizellomycetales 34478 Fungi Fungi 453 1.36e-122   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g1228 i0 82.109 88.6058020477816 531 93 90 2 1 530 1782 1253 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 51923 453 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
19339313 19339313 PRJNA1108487_P_NODE_7996_length_257_cov_2.489130_g7930_i0 PRJNA1108487 7996 257 2.48913 6.3970641 Batrachochytrium dendrobatidis 109871 Fungi Fungi 121 6.319999999999999e-23   NTclustered gi|575480991|ref|XM_006679727.1| 684364 g7930 i0 81.046 1.40466926070039 153 27 59 2 51 202 176 25 Batrachochytrium dendrobatidis JAM81 uncharacterized protein (BATDEDRAFT_12294), partial mRNA blastn 361 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;