RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4040204 4040204 PRJNA1108487_P_NODE_2404_length_437_cov_1.258242_g2338_i0 PRJNA1108487 2404 437 1.258242 5.49851754 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 67.6 1.51e-6   NTclustered gi|921130065|ref|XM_013584114.1| 51315 g2338 i0 97.436 2.1533180778032 39 1 9 0 395 433 1069 1107 Eimeria necatrix U3 small nucleolar ribonucleoprotein protein MPP10, putative partial mRNA blastn 941 67.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
5316324 5316324 PRJNA1108487_P_NODE_6145_length_289_cov_1.444444_g6079_i0 PRJNA1108487 6145 289 1.444444 4.17444316 Eimeria praecox 51316 SAR_Eukaryotes SAR_Eukaryotes 73.1 2.05e-8   NTclustered gi|2638822883|emb|OY986962.1| 51316 g6079 i0 97.619 16.5328719723183 42 1 15 0 232 273 22345 22304 Eimeria praecox genome assembly, organelle: plastid:chloroplast blastn 4778 73.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria praecox
12967281 12967281 PRJNA1108487_P_NODE_5851_length_295_cov_1.405405_g5785_i0 PRJNA1108487 5851 295 1.405405 4.14594475 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.027   NTclustered gi|916504441|ref|XM_013497445.1| 44415 g5785 i0 100 0.0949152542372881 28 0 9 0 234 261 116 143 Eimeria mitis uncharacterized protein (EMH_0006120), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
15048282 15048282 PRJNA1108487_P_NODE_4632_length_325_cov_1.384921_g4566_i0 PRJNA1108487 4632 325 1.384921 4.50099325 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 213 1.32e-50   NTclustered gi|160318|gb|M86865.1|PFAH2AA 5833 g4566 i0 83.122 12.9384615384615 237 37 73 3 22 257 309 75 Plasmodium falciparum histone 2A (H2A) mRNA, complete cds blastn 4205 213 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
16790601 16790601 PRJNA1108487_P_NODE_9954_length_247_cov_0.896552_g9888_i0 PRJNA1108487 9954 247 0.896552 2.21448344 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 195 3.51e-45   NTclustered gi|401402052|ref|XM_003881109.1| 572307 g9888 i0 81.59 91.6072874493927 239 40 96 4 11 247 85 321 Neospora caninum Liverpool putative ubiquitin / ribosomal protein CEP52 fusion protein (NCLIV_042000), partial mRNA blastn 22627 195 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
20146948 20146948 PRJNA1108487_P_NODE_6956_length_273_cov_2.150000_g6890_i0 PRJNA1108487 6956 273 2.15 5.8695 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 202 2.3499999999999996e-47   NTclustered gi|527100028|dbj|AK441278.1| 5865 g6890 i0 83.333 78.4652014652015 222 33 81 4 1 220 671 890 Babesia bovis BBOV_III011800 mRNA for ribosomal protein L2 family protein, complete cds, clone: XBBk012367, strain: Texas blastn 21421 202 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis
24439307 24439307 PRJNA1108487_P_NODE_11720_length_205_cov_5.098485_g11654_i0 PRJNA1108487 11720 205 5.098485 10.45189425 Cryptosporidium sp. chipmunk genotype I 1280935 SAR_Eukaryotes SAR_Eukaryotes 102 1.75e-17   NTclustered gi|2787704165|ref|XM_067344148.1| 1280935 g11654 i0 83.036 14.8878048780488 112 19 55 0 94 205 229 118 Cryptosporidium sp. chipmunk genotype I 60S ribosomal L40 (ELE39_001109), partial mRNA blastn 3052 102 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. chipmunk genotype I

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;