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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 16 ✖

bioproject 1

  • PRJNA1108487 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213413 213413 PRJNA1108487_P_NODE_4361_length_333_cov_4.665385_g4295_i0 PRJNA1108487 4361 333 4.665385 15.53573205 Polytomella parva 51329 Plants Plants 361 4.59e-95   NTclustered gi|1861356233|gb|MT377344.1| 51329 g4295 i0 86.186 99.2102102102102 333 46 100 0 1 333 780 1112 Polytomella parva clone 0016303185 chain x, ATP synthase subunit beta (ATP5F1B) mRNA, complete cds; plastid blastn 33037 361 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
1020494 1020494 PRJNA1108487_P_NODE_6381_length_284_cov_2.208531_g6315_i0 PRJNA1108487 6381 284 2.208531 6.27222804 Eukaryota 2759 Plants Plants 340 4.999999999999999e-89   NTclustered gi|969822378|gb|KT950956.1| 432605 g6315 i0 92.149 85.4049295774648 242 17 85 2 1 241 253 13 Valonia macrophysa isolate 1528 actin gene, partial cds blastn 24255 340 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Valoniaceae Valonia Valonia macrophysa
3571131 3571131 PRJNA1108487_P_NODE_6843_length_275_cov_2.292079_g6777_i0 PRJNA1108487 6843 275 2.292079 6.30321725 Polytomella 3049 Plants Plants 161 4.02e-35   NTclustered gi|28193497|emb|AJ439528.1| 37502 g6777 i0 77.617 19.1272727272727 277 54 99 8 3 275 449 177 Polytomella sp. 'Pringsheim 198.80' mRNA for 40S ribosomal protein s5 (rs5 gene) blastn 5260 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
4040203 4040203 PRJNA1108487_P_NODE_2364_length_441_cov_1.483696_g2298_i0 PRJNA1108487 2364 441 1.483696 6.54309936 Chlorella variabilis 554065 Plants Plants 202 4e-47   NTclustered gi|552841589|ref|XM_005850287.1| 554065 g2298 i0 89.024 37.6326530612245 164 16 37 2 26 188 863 1025 Chlorella variabilis hypothetical protein (CHLNCDRAFT_30080) mRNA, partial cds blastn 16596 202 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
4040221 4040221 PRJNA1108487_P_NODE_4804_length_320_cov_1.838057_g4738_i0 PRJNA1108487 4804 320 1.838057 5.8817824 Volvox carteri 3067 Plants Plants 276 1.64e-69   NTclustered gi|302836142|ref|XM_002949586.1| 3068 g4738 i0 82.298 92.003125 322 53 100 4 1 320 785 1104 Volvox carteri f. nagariensis succinate dehydrogenase subunit A, mitochondrial (sdh1), mRNA blastn 29441 276 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
5316327 5316327 PRJNA1108487_P_NODE_665_length_796_cov_7.035961_g607_i0 PRJNA1108487 665 796 7.035961 56.00624956 Monoraphidium neglectum 145388 Plants Plants 231 9.56e-56   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g607 i0 80.192 19.285175879397 313 58 39 4 83 393 55 365 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 15351 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
6123604 6123604 PRJNA1108487_P_NODE_1645_length_524_cov_1.432373_g1579_i0 PRJNA1108487 1645 524 1.432373 7.50563452 root 1 Root_unresolved Root_unresolved 54.7 0.014   NTclustered gi|2082265843|ref|XM_043070493.1| 3055 g1579 i0 100 0.110687022900763 29 0 6 0 275 303 775 803 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_15g634750v5), mRNA blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
6591498 6591498 PRJNA1108487_P_NODE_106_length_1572_cov_3.486991_g82_i0 PRJNA1108487 106 1572 3.486991 54.81549852 Monoraphidium neglectum 145388 Plants Plants 911 0   NTclustered gi|926791444|ref|XM_014048742.1| 145388 g82 i0 79.259 86.9961832061069 1350 246 85 30 106 1441 1678 3007 Monoraphidium neglectum adenosylhomocysteinase mRNA blastn 136758 911 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
7866180 7866180 PRJNA1108487_P_NODE_4767_length_321_cov_1.758065_g4701_i0 PRJNA1108487 4767 321 1.758065 5.64338865 Chlamydomonas reinhardtii 3055 Plants Plants 228 4.659999999999999e-55   NTclustered gi|2082251132|ref|XM_001692487.2| 3055 g4701 i0 81.852 68.0467289719626 270 49 84 0 36 305 1507 1238 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g343700v5), mRNA blastn 21843 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
11223977 11223977 PRJNA1108487_P_NODE_11189_length_242_cov_0.923077_g11123_i0 PRJNA1108487 11189 242 0.923077 2.23384634 Eukaryota 2759 Plants Plants 58.4 4.69e-4   NTclustered gi|2082266707|ref|XM_043070771.1| 3055 g11123 i0 100 4.38429752066116 31 0 13 0 152 182 4304 4334 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g649433v5), mRNA blastn 1061 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12967252 12967252 PRJNA1108487_P_NODE_1591_length_529_cov_2.936404_g1525_i0 PRJNA1108487 1591 529 2.936404 15.53357716 Chlamydomonas reinhardtii 3055 Plants Plants 346 2.13e-90   NTclustered gi|2082241923|ref|XM_001697441.2| 3055 g1525 i0 80.973 69.1039697542533 452 72 84 12 37 481 755 1199 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g160500v5), mRNA blastn 36556 346 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16323118 16323118 PRJNA1108487_P_NODE_893_length_689_cov_10.477273_g831_i0 PRJNA1108487 893 689 10.477273 72.18841097 Eukaryota 2759 Plants Plants 324 1.32e-83   NTclustered gi|552825417|ref|XM_005846759.1| 554065 g831 i0 81.818 29.3323657474601 385 70 56 0 135 519 13 397 Chlorella variabilis 40S ribosomal protein S14 (CHLNCDRAFT_135401) mRNA, complete cds blastn 20210 327 0.990825688073395 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
18065091 18065091 PRJNA1108487_P_NODE_1935_length_487_cov_18.582126_g1869_i0 PRJNA1108487 1935 487 18.582126 90.49495362 Chlamydomonas reinhardtii 3055 Plants Plants 106 3.59e-18   NTclustered gi|2082260798|ref|XM_001697008.2| 3055 g1869 i0 92 1.13963039014374 75 6 15 0 283 357 957 1031 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g520500v5), mRNA blastn 555 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20146947 20146947 PRJNA1108487_P_NODE_616_length_822_cov_1.144192_g558_i0 PRJNA1108487 616 822 1.144192 9.40525824 Chlorophyta 3041 Plants Plants 494 1.14e-134   NTclustered gi|2082256114|ref|XM_001702538.2| 3055 g558 i0 80.787 76.0182481751825 635 118 77 4 1 633 899 1531 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g422600v5), mRNA blastn 62487 494 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20614533 20614533 PRJNA1108487_P_NODE_11617_length_228_cov_2.225806_g11551_i0 PRJNA1108487 11617 228 2.225806 5.07483768 Chlamydomonas reinhardtii 3055 Plants Plants 220 5.26e-53   NTclustered gi|2082257783|ref|XM_001698358.2| 3055 g11551 i0 84.211 18.4912280701754 228 35 100 1 1 228 1399 1173 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g461050v5), mRNA blastn 4216 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
21422632 21422632 PRJNA1108487_P_NODE_7657_length_262_cov_2.444444_g7591_i0 PRJNA1108487 7657 262 2.444444 6.40444328 Eukaryota 2759 Plants Plants 484 1.99e-132   NTclustered gi|1714003650|gb|MN243923.1| 3079 g7591 i0 100 100.003816793893 262 0 100 0 1 262 25 286 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 26201 484 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;