RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1108487 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213409 213409 PRJNA1108487_P_NODE_3801_length_353_cov_2.150000_g3735_i0 PRJNA1108487 3801 353 2.15 7.5895 Aquisphaera giovannonii 406548 Bacteria Bacteria 451 2.8200000000000004e-122   NTclustered gi|1730068067|gb|CP042997.1| 406548 g3735 i0 89.831 70.9348441926346 354 33 100 3 1 353 5179858 5179507 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 25040 451 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii
1488111 1488111 PRJNA1108487_P_NODE_5142_length_311_cov_3.277311_g5076_i0 PRJNA1108487 5142 311 3.277311 10.19243721 Phycisphaerales bacterium 2052180 Bacteria Bacteria 69.4 2.89e-7   NTclustered gi|2108248627|gb|CP070691.1| 2052180 g5076 i0 97.5 7.64630225080386 40 1 13 0 202 241 2531826 2531865 MAG: Phycisphaerales bacterium isolate bin621 chromosome blastn 2378 69.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
6123606 6123606 PRJNA1108487_P_NODE_2465_length_431_cov_2.145251_g2399_i0 PRJNA1108487 2465 431 2.145251 9.24603181 Isosphaeraceae 1763524 Bacteria Bacteria 676 0   NTclustered gi|1730068067|gb|CP042997.1| 406548 g2399 i0 97.015 237.668213457077 402 12 93 0 30 431 5179405 5179004 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 102435 680 0.994117647058824 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii
15516031 15516031 PRJNA1108487_P_NODE_353_length_1020_cov_6.183738_g309_i0 PRJNA1108487 353 1020 6.183738 63.0741276 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 73.1 7.94e-8   NTclustered gi|2258877542|gb|CP060234.1| 2026777 g309 i0 74.123 0.284313725490196 228 35 21 17 620 829 2220386 2220165 MAG: Phycisphaeraceae bacterium isolate HK-STAS-PLAN-6 chromosome blastn 290 73.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;