RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1108487" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA1108487 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
213395 213395 PRJNA1108487_P_NODE_1201_length_605_cov_1.304511_g1137_i0 PRJNA1108487 1201 605 1.304511 7.89229155 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 540 1.0499999999999997e-148   NTclustered gi|290996126|ref|XM_002680588.1| 5762 g1137 i0 83.108 95.6198347107438 592 100 98 0 2 593 620 29 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55154), mRNA blastn 57850 540 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
3571134 3571134 PRJNA1108487_P_NODE_9743_length_248_cov_0.891429_g9677_i0 PRJNA1108487 9743 248 0.891429 2.21074392 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 200 7.569999999999999e-47   NTclustered gi|2124386089|ref|XM_044707915.1| 5763 g9677 i0 83.81 74.9556451612903 210 34 85 0 38 247 79 288 Naegleria fowleri uncharacterized protein (FDP41_004495), partial mRNA blastn 18589 200 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
5316320 5316320 PRJNA1108487_P_NODE_4905_length_317_cov_2.827869_g4839_i0 PRJNA1108487 4905 317 2.827869 8.96434473 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 263 1.26e-65   NTclustered gi|2124389574|ref|XM_044709659.1| 5763 g4839 i0 83.045 34.2492113564669 289 49 91 0 1 289 997 709 Naegleria fowleri uncharacterized protein (FDP41_006065), partial mRNA blastn 10857 263 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
16790563 16790563 PRJNA1108487_P_NODE_3454_length_368_cov_1.505085_g3388_i0 PRJNA1108487 3454 368 1.505085 5.5387128 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 211 5.45e-50   NTclustered gi|560190589|gb|KF633467.1| 91374 g3388 i0 84 71.2880434782609 225 30 61 5 145 368 2691 2910 Diplonema papillatum strain ATCC 50162 28S ribosomal RNA gene, complete sequence blastn 26234 211 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
21890240 21890240 PRJNA1108487_P_NODE_3138_length_385_cov_1.192308_g3072_i0 PRJNA1108487 3138 385 1.192308 4.5903858 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 512 1.4000000000000001e-140   NTclustered gi|1059971677|gb|KT892699.1| 1892890 g3072 i0 92.329 54.3662337662338 365 20 95 4 1 364 1179 822 Heterolobosea sp. strain LPG3 18S ribosomal RNA gene, partial sequence blastn 20931 512 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
23165750 23165750 PRJNA1108487_P_NODE_4439_length_331_cov_1.682171_g4373_i0 PRJNA1108487 4439 331 1.682171 5.56798601 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 244 4.79e-60   NTclustered gi|340055855|emb|HE573025.1| 1055687 g4373 i0 82.847 3.17824773413897 274 45 82 2 59 331 1808040 1807768 Trypanosoma vivax Y486 annotated genomic contig, chromosome 9 blastn 1052 244 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
23165765 23165765 PRJNA1108487_P_NODE_6119_length_290_cov_1.004608_g6053_i0 PRJNA1108487 6119 290 1.004608 2.9133632 Neobodo designis 312471 Euglenozoa other_Eukaryota 292 1.45e-74   NTclustered gi|116222274|gb|DQ980523.1| 312471 g6053 i0 84.88 99.2 291 42 100 2 1 290 705 994 Neobodo designis clone ndtub2 beta tubulin gene, partial cds blastn 28768 292 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;