RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16789991 16789991 PRJNA1108009_P_NODE_17994_length_306_cov_1.652361_g17676_i0 PRJNA1108009 17994 306 1.652361 5.05622466 Argopecten irradians 31199 Mollusca Mollusca 248 3.3899999999999995e-61   NTclustered gi|2835371159|ref|XM_069259847.1| 31199 g17676 i0 82.562 91.1601307189542 281 49 92 0 24 304 150 430 PREDICTED: Argopecten irradians actin, cytoplasmic-like (LOC138317873), mRNA blastn 27895 248 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
19338860 19338860 PRJNA1108009_P_NODE_23176_length_262_cov_1.317460_g22858_i0 PRJNA1108009 23176 262 1.31746 3.4517452 Mizuhopecten yessoensis 6573 Mollusca Mollusca 52.8 0.024   NTclustered gi|1207954058|ref|XM_021483806.1| 6573 g22858 i0 100 0.106870229007634 28 0 11 0 235 262 285 258 PREDICTED: Mizuhopecten yessoensis 60S ribosomal protein L44 (LOC110440639), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
23165460 23165460 PRJNA1108009_P_NODE_29979_length_243_cov_1.358824_g29661_i0 PRJNA1108009 29979 243 1.358824 3.30194232 Argopecten irradians 31199 Mollusca Mollusca 89.8 1.67e-13   NTclustered gi|2835348111|ref|XM_069246291.1| 31199 g29661 i0 89.855 1.16460905349794 69 7 28 0 160 228 469 537 PREDICTED: Argopecten irradians procathepsin L-like (LOC138305982), mRNA blastn 283 89.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;