RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108009 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212634 212634 PRJNA1108009_P_NODE_10521_length_415_cov_1.426901_g10203_i0 PRJNA1108009 10521 415 1.426901 5.92163915 Pleistophora mulleri 249366 Fungi Fungi 307 7.710000000000001e-79   NTclustered gi|134147422|gb|EF119339.1| 249366 g10203 i0 80.615 10.4819277108434 423 60 99 18 5 415 2759 2347 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 4350 307 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
5315588 5315588 PRJNA1108009_P_NODE_12165_length_383_cov_1.729032_g11847_i0 PRJNA1108009 12165 383 1.729032 6.62219256 Pseudoloma neurophilia 146866 Fungi Fungi 704 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g11847 i0 99.739 98.1201044386423 383 1 100 0 1 383 1906 1524 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 37580 704 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
12966863 12966863 PRJNA1108009_P_NODE_23591_length_259_cov_1.215054_g23273_i0 PRJNA1108009 23591 259 1.215054 3.14698986 Heterosporis anguillarum 184033 Fungi Fungi 307 4.5600000000000005e-79   NTclustered gi|27448231|gb|AF387331.1| 184033 g23273 i0 88.168 55.9266409266409 262 26 100 4 1 259 2078 1819 Heterosporis anguillarum small subunit ribosomal RNA gene, internal transcribed spacer, and large subunit ribosomal RNA gene, complete sequence blastn 14485 307 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis anguillarum
22697521 22697521 PRJNA1108009_P_NODE_8178_length_480_cov_1.371007_g7861_i0 PRJNA1108009 8178 480 1.371007 6.5808336 Nosema 27977 Fungi Fungi 351 4.1199999999999996e-92   NTclustered gi|71082692|gb|DQ083402.1| 319078 g7861 i0 80.889 20.85625 450 83 93 3 28 475 945 497 Nosema plutellae isolate PX2 alpha-tubulin gene, partial cds blastn 10011 353 0.994334277620397 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Nosema Nosema sp. 'plutellae'

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;