RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4039450 4039450 PRJNA1108009_P_NODE_11384_length_397_cov_1.299383_g11066_i0 PRJNA1108009 11384 397 1.299383 5.15855051 Polychytrium aggregatum 110093 Fungi Fungi 296 1.59e-75   NTclustered gi|2432145256|ref|XM_053110808.1| 110093 g11066 i0 80.348 97.6725440806045 402 70 99 7 1 394 1186 1586 Polychytrium aggregatum hsp71-like protein (BJ171DRAFT_502900), mRNA blastn 38776 296 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14241526 14241526 PRJNA1108009_P_NODE_12352_length_380_cov_0.996743_g12034_i0 PRJNA1108009 12352 380 0.996743 3.7876234 Polychytrium aggregatum 110093 Fungi Fungi 174 7.41e-39   NTclustered gi|2432142218|ref|XM_053114797.1| 110093 g12034 i0 80 55.0789473684211 245 42 64 5 83 325 501 262 Polychytrium aggregatum ribosomal protein S13/S18-domain-containing protein (BJ171DRAFT_597985), partial mRNA blastn 20930 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14242178 14242178 PRJNA1108009_P_NODE_9632_length_437_cov_3.675824_g9314_i0 PRJNA1108009 9632 437 3.675824 16.06335088 Polychytrium aggregatum 110093 Fungi Fungi 292 2.29e-74   NTclustered gi|2432174432|ref|XM_053112740.1| 110093 g9314 i0 80.5 90.649885583524 400 62 90 13 43 437 429 817 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_529498), partial mRNA blastn 39614 294 0.993197278911565 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;