RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7865686 7865686 PRJNA1108009_P_NODE_20307_length_285_cov_1.344340_g19989_i0 PRJNA1108009 20307 285 1.34434 3.831369 Leptotrichia sp. oral taxon 221 712362 Bacteria Bacteria 516 7.77e-142   NTclustered gi|2028889048|gb|CP072378.1| 712362 g19989 i0 99.298 80.5052631578947 285 2 100 0 1 285 41684 41968 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome blastn 22944 516 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 221
18065041 18065041 PRJNA1108009_P_NODE_8975_length_456_cov_1.313316_g8657_i0 PRJNA1108009 8975 456 1.313316 5.98872096 Fusobacteria bacterium ZRK30 2970471 Bacteria Bacteria 56.5 0.003   NTclustered gi|2284595238|gb|CP102405.1| 2970471 g8657 i0 100 0.0657894736842105 30 0 7 0 233 262 2350977 2350948 Fusobacteria bacterium ZRK30 chromosome 2, complete sequence blastn 30 56.5 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteria bacterium ZRK30
20614081 20614081 PRJNA1108009_P_NODE_20177_length_286_cov_1.417840_g19859_i0 PRJNA1108009 20177 286 1.41784 4.0550224 Leptotrichia sp. oral taxon 221 712362 Bacteria Bacteria 529 1e-145   NTclustered gi|2028889048|gb|CP072378.1| 712362 g19859 i0 100 24.7972027972028 286 0 100 0 1 286 1831596 1831311 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome blastn 7092 529 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 221

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;