RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1487613 1487613 PRJNA1108009_P_NODE_19902_length_288_cov_1.674419_g19584_i0 PRJNA1108009 19902 288 1.674419 4.82232672 Chlamydaster sterni 193542 Root_unresolved Root_unresolved 171 7.05e-38   NTclustered gi|33089907|gb|AY283744.1| 193542 g19584 i0 78.058 79.5034722222222 278 55 95 6 14 288 582 308 Chlamydaster sterni isolate Chlam30_2 actin mRNA, partial cds blastn 22897 171 1 Eukaryota Haptista     Centroplasthelida Pterocystida Pterocystidae Chlamydaster Chlamydaster sterni
11691699 11691699 PRJNA1108009_P_NODE_23010_length_263_cov_2.000000_g22692_i0 PRJNA1108009 23010 263 2 5.26 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 135 2.32e-27   NTclustered gi|551617584|ref|XM_005789563.1| 280463 g22692 i0 82.39 4.54372623574144 159 24 60 4 46 202 235 79 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 1195 135 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
20614272 20614272 PRJNA1108009_P_NODE_28697_length_245_cov_0.895349_g28379_i0 PRJNA1108009 28697 245 0.895349 2.19360505 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 202 2.08e-47   NTclustered gi|551591459|ref|XM_005779912.1| 280463 g28379 i0 85.864 0.779591836734694 191 25 78 2 3 192 1306 1495 Emiliania huxleyi CCMP1516 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase partial mRNA blastn 191 202 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;