RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11223896 11223896 PRJNA1108009_P_NODE_23769_length_257_cov_1.619565_g23451_i0 PRJNA1108009 23769 257 1.619565 4.16228205 Cyanophyceae 3028117 Bacteria Bacteria 475 1.1699999999999999e-129   NTclustered gi|521763817|gb|KC463683.1| 1211 g23451 i0 100 101.937743190661 257 0 100 0 1 257 591 847 Uncultured cyanobacterium clone BkfYyy_800 16S ribosomal RNA gene, partial sequence blastn 26198 475 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
19338740 19338740 PRJNA1108009_P_NODE_18996_length_296_cov_1.717489_g18678_i0 PRJNA1108009 18996 296 1.717489 5.08376744 Synechococcus sp. LTW-R 2751170 Bacteria Bacteria 134 9.54e-27   NTclustered gi|1891299085|gb|CP059060.1| 2751170 g18678 i0 77.778 12.4054054054054 216 48 73 0 45 260 2039874 2039659 Synechococcus sp. LTW-R chromosome, complete genome blastn 3672 134 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. LTW-R
20614248 20614248 PRJNA1108009_P_NODE_27417_length_247_cov_0.885057_g27099_i0 PRJNA1108009 27417 247 0.885057 2.18609079 Calothrix sp. 336/3 1337936 Bacteria Bacteria 75 4.76e-9   NTclustered gi|817925425|gb|CP011382.1| 1337936 g27099 i0 100 2.23076923076923 40 0 17 0 1 40 817206 817167 Calothrix sp. 336/3, complete genome blastn 551 75 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. 336/3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;