RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1108009 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1487931 1487931 PRJNA1108009_P_NODE_5102_length_618_cov_1.937615_g4793_i0 PRJNA1108009 5102 618 1.937615 11.9744607 Thecamonas trahens 529818 Root_unresolved Root_unresolved 289 4.29e-73   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g4793 i0 76.607 48.878640776699 560 109 88 20 41 586 711 160 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 30207 289 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
7865573 7865573 PRJNA1108009_P_NODE_1627_length_1044_cov_2.058702_g1403_i0 PRJNA1108009 1627 1044 2.058702 21.49284888 Thecamonas trahens 529818 Root_unresolved Root_unresolved 403 2.5399999999999993e-107   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g1403 i0 76.428 17.3591954022989 823 148 77 33 114 913 198 997 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 18123 403 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;