RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1108009" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1108009 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212930 212930 PRJNA1108009_P_NODE_20461_length_284_cov_1.118483_g20143_i0 PRJNA1108009 20461 284 1.118483 3.17649172 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 196 1.14e-45   NTclustered gi|470381496|ref|XM_004333736.1| 1257118 g20143 i0 80 39.5492957746479 270 50 94 3 3 270 388 655 Acanthamoeba castellanii str. Neff methylmalonatesemialdehyde dehydrogenase (acylating), putative (ACA1_362550), partial mRNA blastn 11232 196 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6590835 6590835 PRJNA1108009_P_NODE_13506_length_360_cov_2.069686_g13188_i0 PRJNA1108009 13506 360 2.069686 7.4508696 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 189 2.4899999999999996e-43   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g13188 i0 84.375 53.6194444444444 192 30 53 0 28 219 312 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 19303 189 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9140738 9140738 PRJNA1108009_P_NODE_27988_length_246_cov_1.115607_g27670_i0 PRJNA1108009 27988 246 1.115607 2.74439322 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 233 7.39e-57   NTclustered gi|470439766|ref|XM_004339180.1| 1257118 g27670 i0 84.082 7.72764227642276 245 36 99 3 1 243 1167 924 Acanthamoeba castellanii str. Neff Inositol3-phosphate synthase (ACA1_058810), partial mRNA blastn 1901 233 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9948697 9948697 PRJNA1108009_P_NODE_5448_length_597_cov_3.463740_g5137_i0 PRJNA1108009 5448 597 3.46374 20.6785278 Vannellidae 95227 Discosea other_Eukaryota 979 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g5137 i0 96.321 100.904522613065 598 19 100 3 1 597 1092 1687 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 60240 981 0.99796126401631 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
10416408 10416408 PRJNA1108009_P_NODE_2209_length_915_cov_2.358670_g1962_i0 PRJNA1108009 2209 915 2.35867 21.5818305 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 545 3.48e-150   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g1962 i0 79.09 80.8142076502732 813 155 88 11 2 808 1717 2520 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 73945 545 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10416703 10416703 PRJNA1108009_P_NODE_5329_length_604_cov_5.551789_g5019_i0 PRJNA1108009 5329 604 5.551789 33.53280556 Ripella sp. GP2 1217115 Discosea other_Eukaryota 891 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g5019 i0 95.382 91.135761589404 563 20 93 5 44 604 3 561 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 55046 891 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
16323081 16323081 PRJNA1108009_P_NODE_7833_length_491_cov_5.827751_g7516_i0 PRJNA1108009 7833 491 5.827751 28.61425741 Ripella 1217112 Discosea other_Eukaryota 721 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g7516 i0 93.306 100.757637474542 493 25 99 6 2 491 1073 586 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 49472 721 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
19339129 19339129 PRJNA1108009_P_NODE_5436_length_598_cov_1.982857_g5125_i0 PRJNA1108009 5436 598 1.982857 11.85748486 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 503 1.36e-137   NTclustered gi|470447963|ref|XM_004340066.1| 1257118 g5125 i0 83.456 66.561872909699 544 86 91 4 1 542 1057 1598 Acanthamoeba castellanii str. Neff ATP synthase, putative (ACA1_367940), partial mRNA blastn 39804 503 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;