RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_phylum = "Pisuviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1105232 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11691298 11691298 PRJNA1105232_S_NODE_5890_length_248_cov_3.969849_g5674_i0 PRJNA1105232 5890 248 3.969849 9.84522552 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.006   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g5674 i0 100 0.229838709677419 29 0 12 0 220 248 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
12966404 12966404 PRJNA1105232_S_NODE_12651_length_183_cov_1.014925_g12435_i0 PRJNA1105232 12651 183 1.014925 1.85731275 Zebrafish picornavirus 1 2304617 Viruses Viruses 250 5.15e-62   NTclustered gi|2500378199|ref|NC_076245.1| 2304617 g12435 i0 98.582 3.0655737704918 141 2 100 0 43 183 5635 5495 Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome blastn 561 250 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
19338412 19338412 PRJNA1105232_S_NODE_1576_length_410_cov_48.667590_g1361_i0 PRJNA1105232 1576 410 48.66759 199.537119 Zebrafish picornavirus 1 2304617 Viruses Viruses 712 0   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g1361 i0 98.049 4.26341463414634 410 7 100 1 1 410 8221 7813 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 1748 712 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;