RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1105232 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2295838 2295838 PRJNA1105232_S_NODE_3042_length_322_cov_2.274725_g2826_i0 PRJNA1105232 3042 322 2.274725 7.3246145 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 158 6.23e-34   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g2826 i0 79.149 49.6304347826087 235 43 72 5 1 232 450 219 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 15981 158 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
9140206 9140206 PRJNA1105232_S_NODE_5848_length_249_cov_2.860000_g5632_i0 PRJNA1105232 5848 249 2.86 7.1214 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 148 2.7899999999999996e-31   NTclustered gi|675169594|ref|XM_008895434.1| 761204 g5632 i0 79.245 3.71084337349398 212 44 85 0 35 246 482 271 Phytophthora parasitica INRA-310 40S ribosomal protein S16 mRNA blastn 924 148 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;