RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1105232 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18064233 18064233 PRJNA1105232_S_NODE_11655_length_189_cov_1.857143_g11439_i0 PRJNA1105232 11655 189 1.857143 3.51000027 Pestivirus bovis 3052619 Viruses Viruses 331 1.86e-86   NTclustered gi|2858850717|gb|PQ613792.1| 11099 g11439 i0 98.404 99.9259259259259 188 3 99 0 1 188 8781 8594 Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds blastn 18886 331 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
24438473 24438473 PRJNA1105232_S_NODE_10260_length_199_cov_25.033333_g10044_i0 PRJNA1105232 10260 199 25.033333 49.81633267 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.005   NTclustered gi|1995060321|gb|MN450069.1| 12164 g10044 i0 100 0.728643216080402 29 0 15 0 171 199 41 13 Carnation latent virus isolate KL, complete genome blastn 145 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
24438479 24438479 PRJNA1105232_S_NODE_12320_length_185_cov_0.860294_g12104_i0 PRJNA1105232 12320 185 0.860294 1.5915439 Jujube closterovirus 1 3043313 Viruses Viruses 56.5 0.001   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g12104 i0 100 0.313513513513514 30 0 16 0 1 30 6 35 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;