RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1105232 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9140209 9140209 PRJNA1105232_S_NODE_6428_length_240_cov_2.146597_g6212_i0 PRJNA1105232 6428 240 2.146597 5.1518328 Dictyostelium purpureum 5786 Evosea other_Eukaryota 159 1.24e-34   NTclustered gi|330819061|ref|XM_003291536.1| 5786 g6212 i0 80.769 0.866666666666667 208 36 86 2 35 240 629 424 Dictyostelium purpureum cystathionine beta-synthase (DICPUDRAFT_49929), mRNA blastn 208 159 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
15515187 15515187 PRJNA1105232_S_NODE_13413_length_178_cov_2.015504_g13197_i0 PRJNA1105232 13413 178 2.015504 3.58759712 Dictyostelium purpureum 5786 Evosea other_Eukaryota 176 8.56e-40   NTclustered gi|330798428|ref|XM_003287207.1| 5786 g13197 i0 85.465 16.5842696629213 172 21 96 4 9 178 1097 1266 Dictyostelium purpureum 26S proteasome subunit ATPase 5 (DICPUDRAFT_91882), mRNA blastn 2952 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;